6 items (Balaenoptera acutorostrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAD1	Mothers against decapentaplegic homolog. (465 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)
	SMAD5	Mothers against decapentaplegic homolog. (465 aa)
	POT1	Protection of telomeres protein 1 isoform X1. (785 aa)
	SP7	Transcription factor Sp7. (431 aa)
	DROSHA	Ribonuclease 3 isoform X1. (1373 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAD1	SMAD3	A0A384AQ00	A0A383YTC5	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.947
SMAD1	SMAD5	A0A384AQ00	A0A383ZAR7	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.964
SMAD3	SMAD1	A0A383YTC5	A0A384AQ00	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.947
SMAD3	SMAD5	A0A383YTC5	A0A383ZAR7	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.606
SMAD5	SMAD1	A0A383ZAR7	A0A384AQ00	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.964
SMAD5	SMAD3	A0A383ZAR7	A0A383YTC5	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.606