9 items (Balaenoptera acutorostrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TAL1	T-cell acute lymphocytic leukemia protein 1. (172 aa)
	LHX1	LIM/homeobox protein Lhx1. (406 aa)
	WNT1	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (370 aa)
	LHX5	LIM/homeobox protein Lhx5. (404 aa)
	WNT3A	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (352 aa)
	GSX2	GS homeobox 2. (299 aa)
	ASCL1	Achaete-scute homolog 1. (169 aa)
	GSX1	GS homeobox 1. (256 aa)
	LHX3	LIM/homeobox protein Lhx3. (493 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASCL1	GSX1	A0A383YTI0	A0A383YNC3	Achaete-scute homolog 1.	GS homeobox 1.	0.634
ASCL1	GSX2	A0A383YTI0	A0A383Z076	Achaete-scute homolog 1.	GS homeobox 2.	0.761
ASCL1	LHX1	A0A383YTI0	A0A384ASD1	Achaete-scute homolog 1.	LIM/homeobox protein Lhx1.	0.424
ASCL1	LHX3	A0A383YTI0	A0A384B530	Achaete-scute homolog 1.	LIM/homeobox protein Lhx3.	0.451
GSX1	ASCL1	A0A383YNC3	A0A383YTI0	GS homeobox 1.	Achaete-scute homolog 1.	0.634
GSX2	ASCL1	A0A383Z076	A0A383YTI0	GS homeobox 2.	Achaete-scute homolog 1.	0.761
LHX1	ASCL1	A0A384ASD1	A0A383YTI0	LIM/homeobox protein Lhx1.	Achaete-scute homolog 1.	0.424
LHX3	ASCL1	A0A384B530	A0A383YTI0	LIM/homeobox protein Lhx3.	Achaete-scute homolog 1.	0.451
WNT1	WNT3A	A0A383ZW49	A0A383Z4E5	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.528
WNT3A	WNT1	A0A383Z4E5	A0A383ZW49	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.528