(13 nodes) Photoreceptor cell outer segment organization network (Balaenoptera acutorostrata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RP1	Oxygen-regulated protein 1. (2068 aa)
	NPHP4	Nephrocystin-4. (1400 aa)
	CRB1	Protein crumbs homolog 1 isoform X1. (1417 aa)
	ROM1	Rod outer segment membrane protein 1. (351 aa)
	CDHR1	Cadherin-related family member 1. (879 aa)
	IFT140	Intraflagellar transport protein 140 homolog isoform X1. (1463 aa)
	AHI1	Jouberin isoform X1. (1197 aa)
	PCARE	Photoreceptor cilium actin regulator. (1307 aa)
	BBS4	Bardet-Biedl syndrome 4 protein isoform X1. (517 aa)
	PRPH2	Peripherin-2. (346 aa)
	CNGB1	Cyclic nucleotide-gated cation channel beta-1. (1322 aa)
	IFT20	LOW QUALITY PROTEIN: intraflagellar transport protein 20 homolog. (159 aa)
	MFSD2A	Sodium-dependent lysophosphatidylcholine symporter 1 isoform X1. (529 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHI1	NPHP4	A0A384AUJ6	A0A383YU22	Jouberin isoform X1.	Nephrocystin-4.	0.511
BBS4	IFT140	A0A384BDQ0	A0A384A350	Bardet-Biedl syndrome 4 protein isoform X1.	Intraflagellar transport protein 140 homolog isoform X1.	0.496
BBS4	IFT20	A0A384BDQ0	A0A452CI88	Bardet-Biedl syndrome 4 protein isoform X1.	LOW QUALITY PROTEIN: intraflagellar transport protein 20 homolog.	0.568
BBS4	NPHP4	A0A384BDQ0	A0A383YU22	Bardet-Biedl syndrome 4 protein isoform X1.	Nephrocystin-4.	0.500
CDHR1	PRPH2	A0A383ZHS2	A0A384BEQ0	Cadherin-related family member 1.	Peripherin-2.	0.428
CNGB1	PRPH2	A0A452C732	A0A384BEQ0	Cyclic nucleotide-gated cation channel beta-1.	Peripherin-2.	0.595
CNGB1	ROM1	A0A452C732	A0A383ZH89	Cyclic nucleotide-gated cation channel beta-1.	Rod outer segment membrane protein 1.	0.591
IFT140	BBS4	A0A384A350	A0A384BDQ0	Intraflagellar transport protein 140 homolog isoform X1.	Bardet-Biedl syndrome 4 protein isoform X1.	0.496
IFT140	IFT20	A0A384A350	A0A452CI88	Intraflagellar transport protein 140 homolog isoform X1.	LOW QUALITY PROTEIN: intraflagellar transport protein 20 homolog.	0.804
IFT140	NPHP4	A0A384A350	A0A383YU22	Intraflagellar transport protein 140 homolog isoform X1.	Nephrocystin-4.	0.476
IFT20	BBS4	A0A452CI88	A0A384BDQ0	LOW QUALITY PROTEIN: intraflagellar transport protein 20 homolog.	Bardet-Biedl syndrome 4 protein isoform X1.	0.568
IFT20	IFT140	A0A452CI88	A0A384A350	LOW QUALITY PROTEIN: intraflagellar transport protein 20 homolog.	Intraflagellar transport protein 140 homolog isoform X1.	0.804
NPHP4	AHI1	A0A383YU22	A0A384AUJ6	Nephrocystin-4.	Jouberin isoform X1.	0.511
NPHP4	BBS4	A0A383YU22	A0A384BDQ0	Nephrocystin-4.	Bardet-Biedl syndrome 4 protein isoform X1.	0.500
NPHP4	IFT140	A0A383YU22	A0A384A350	Nephrocystin-4.	Intraflagellar transport protein 140 homolog isoform X1.	0.476
PRPH2	CDHR1	A0A384BEQ0	A0A383ZHS2	Peripherin-2.	Cadherin-related family member 1.	0.428
PRPH2	CNGB1	A0A384BEQ0	A0A452C732	Peripherin-2.	Cyclic nucleotide-gated cation channel beta-1.	0.595
PRPH2	ROM1	A0A384BEQ0	A0A383ZH89	Peripherin-2.	Rod outer segment membrane protein 1.	0.817
ROM1	CNGB1	A0A383ZH89	A0A452C732	Rod outer segment membrane protein 1.	Cyclic nucleotide-gated cation channel beta-1.	0.591
ROM1	PRPH2	A0A383ZH89	A0A384BEQ0	Rod outer segment membrane protein 1.	Peripherin-2.	0.817