56 items (Balaenoptera acutorostrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BMP7	Bone morphogenetic protein 7. (431 aa)
	SMAD2	Mothers against decapentaplegic homolog. (467 aa)
	LOC103020685	Bone morphogenetic protein 8B-like. (201 aa)
	VIM	Vimentin isoform X1; Belongs to the intermediate filament family. (399 aa)
	GDF3	Growth/differentiation factor 3. (364 aa)
	LOC103000722	Bone morphogenetic protein 8A-like. (220 aa)
	GDF15	Growth/differentiation factor 15. (307 aa)
	HNF4A	Hepatocyte nuclear factor 4-alpha isoform X1. (474 aa)
	GDF5	Growth/differentiation factor 5. (511 aa)
	BMP4	Bone morphogenetic protein 4 isoform X1. (420 aa)
	SUB1	Activated RNA polymerase II transcriptional coactivator p15. (127 aa)
	BMP2	Bone morphogenetic protein 2. (395 aa)
	BMP10	Bone morphogenetic protein 10. (423 aa)
	SMAD1	Mothers against decapentaplegic homolog. (465 aa)
	BMP5	Bone morphogenetic protein 5. (454 aa)
	CITED1	LOW QUALITY PROTEIN: cbp/p300-interacting transactivator 1. (200 aa)
	SMAD4	Mothers against decapentaplegic homolog. (553 aa)
	TGFB3	Transforming growth factor beta-3 proprotein. (456 aa)
	HNF1A	Hepatocyte nuclear factor 1-alpha isoform X1. (632 aa)
	LOC103009326	Alpha-fetoprotein. (610 aa)
	JADE2	E3 ubiquitin-protein ligase Jade-2 isoform X1. (849 aa)
	SMAD5	Mothers against decapentaplegic homolog. (465 aa)
	TGFB2	Transforming growth factor beta; Belongs to the TGF-beta family. (442 aa)
	BMP6	Bone morphogenetic protein 6. (388 aa)
	LOC103011711	Bone morphogenetic protein 8A. (109 aa)
	ATOH8	LOW QUALITY PROTEIN: protein atonal homolog 8. (316 aa)
	LOC103008528	Bone morphogenetic protein 8A-like. (112 aa)
	GDF11	Growth/differentiation factor 11. (418 aa)
	HIPK2	Homeodomain-interacting protein kinase 2 isoform X1. (1207 aa)
	GDF10	Growth/differentiation factor 10. (544 aa)
	GDF2	Growth/differentiation factor 2. (432 aa)
	INHBE	Inhibin beta E chain. (351 aa)
	INHBC	Inhibin beta C chain. (352 aa)
	GDF6	Growth/differentiation factor 6. (375 aa)
	BMP3	Bone morphogenetic protein 3; Belongs to the TGF-beta family. (475 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)
	BTBD11	Ankyrin repeat and BTB/POZ domain-containing protein BTBD11. (1013 aa)
	SMAD6	Mothers against decapentaplegic homolog. (321 aa)
	SKI	Ski oncogene. (772 aa)
	LOC103014954	Bone morphogenetic protein 8A-like. (279 aa)
	LOC103002500	Left-right determination factor. (367 aa)
	LOC103005758	Left-right determination factor 2. (226 aa)
	NUP93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (819 aa)
	LOC103003168	Serotransferrin; Belongs to the transferrin family. (707 aa)
	LOC114235396	RNA-binding protein 14 isoform X1. (669 aa)
	LOC103015222	Bone morphogenetic protein 8B. (390 aa)
	LOC103001311	Transcription factor AP-1-like. (199 aa)
	SLC33A1	Acetyl-coenzyme A transporter 1 isoform X1. (546 aa)
	LOC103014668	Transcription factor AP-1; Belongs to the bZIP family. (253 aa)
	TBXT	T-box transcription factor T isoform X2. (436 aa)
	ZMIZ1	Zinc finger MIZ domain-containing protein 1 isoform X1. (1071 aa)
	NODAL	Nodal homolog. (280 aa)
	SMAD9	Mothers against decapentaplegic homolog. (440 aa)
	NCEH1	Neutral cholesterol ester hydrolase 1. (412 aa)
	HEXA	Beta-hexosaminidase. (529 aa)
	SMAD7	Mothers against decapentaplegic homolog. (426 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMP10	BMP4	A0A384ARQ8	A0A384B0Y0	Bone morphogenetic protein 10.	Bone morphogenetic protein 4 isoform X1.	0.534
BMP10	BMP5	A0A384ARQ8	A0A384AIG3	Bone morphogenetic protein 10.	Bone morphogenetic protein 5.	0.529
BMP10	GDF2	A0A384ARQ8	A0A383ZV58	Bone morphogenetic protein 10.	Growth/differentiation factor 2.	0.812
BMP10	SMAD3	A0A384ARQ8	A0A383YTC5	Bone morphogenetic protein 10.	Mothers against decapentaplegic homolog.	0.583
BMP10	SMAD4	A0A384ARQ8	A0A384BC65	Bone morphogenetic protein 10.	Mothers against decapentaplegic homolog.	0.466
BMP10	SMAD5	A0A384ARQ8	A0A383ZAR7	Bone morphogenetic protein 10.	Mothers against decapentaplegic homolog.	0.495
BMP2	BMP4	A0A384AWL0	A0A384B0Y0	Bone morphogenetic protein 2.	Bone morphogenetic protein 4 isoform X1.	0.927
BMP2	BMP5	A0A384AWL0	A0A384AIG3	Bone morphogenetic protein 2.	Bone morphogenetic protein 5.	0.553
BMP2	BMP6	A0A384AWL0	A0A383ZGC8	Bone morphogenetic protein 2.	Bone morphogenetic protein 6.	0.954
BMP2	BMP7	A0A384AWL0	A0A384ADG9	Bone morphogenetic protein 2.	Bone morphogenetic protein 7.	0.650
BMP2	GDF5	A0A384AWL0	A0A384B137	Bone morphogenetic protein 2.	Growth/differentiation factor 5.	0.461
BMP2	SMAD1	A0A384AWL0	A0A384AQ00	Bone morphogenetic protein 2.	Mothers against decapentaplegic homolog.	0.788
BMP2	SMAD2	A0A384AWL0	A0A384BC53	Bone morphogenetic protein 2.	Mothers against decapentaplegic homolog.	0.613
BMP2	SMAD3	A0A384AWL0	A0A383YTC5	Bone morphogenetic protein 2.	Mothers against decapentaplegic homolog.	0.579
BMP2	SMAD4	A0A384AWL0	A0A384BC65	Bone morphogenetic protein 2.	Mothers against decapentaplegic homolog.	0.816
BMP2	SMAD5	A0A384AWL0	A0A383ZAR7	Bone morphogenetic protein 2.	Mothers against decapentaplegic homolog.	0.773
BMP2	SMAD6	A0A384AWL0	A0A383YTH8	Bone morphogenetic protein 2.	Mothers against decapentaplegic homolog.	0.707
BMP2	SMAD7	A0A384AWL0	A0A384BCS8	Bone morphogenetic protein 2.	Mothers against decapentaplegic homolog.	0.687
BMP2	SMAD9	A0A384AWL0	A0A452C3K2	Bone morphogenetic protein 2.	Mothers against decapentaplegic homolog.	0.629
BMP2	TBXT	A0A384AWL0	A0A452CJU5	Bone morphogenetic protein 2.	T-box transcription factor T isoform X2.	0.403