20 items (Balaenoptera acutorostrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AXIN1	Axin-1 isoform X1. (866 aa)
	DDX5	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (614 aa)
	MYOCD	Myocardin isoform X1. (985 aa)
	MEN1	Menin. (517 aa)
	TRIM33	E3 ubiquitin-protein ligase TRIM33. (1088 aa)
	RANBP3	Ran-binding protein 3 isoform X1. (585 aa)
	ZC3H3	Zinc finger CCCH domain-containing protein 3. (937 aa)
	SMAD6	Mothers against decapentaplegic homolog. (321 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)
	LOC103001311	Transcription factor AP-1-like. (199 aa)
	LOC103014668	Transcription factor AP-1; Belongs to the bZIP family. (253 aa)
	PAX6	Paired box protein Pax-6 isoform X1. (493 aa)
	PMEPA1	Protein TMEPAI isoform X1. (282 aa)
	FOXH1	Forkhead box protein H1. (360 aa)
	SMURF1	E3 ubiquitin-protein ligase SMURF1. (719 aa)
	ANKRD1	LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 1. (319 aa)
	DROSHA	Ribonuclease 3 isoform X1. (1373 aa)
	LDLRAD4	LOW QUALITY PROTEIN: low-density lipoprotein receptor class A domain-containing protein 4. (323 aa)
	SMAD4	Mothers against decapentaplegic homolog. (553 aa)
	LOC102997132	LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (620 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AXIN1	SMURF1	A0A384A3R1	A0A384AHI0	Axin-1 isoform X1.	E3 ubiquitin-protein ligase SMURF1.	0.569
DDX5	DROSHA	A0A383ZLP1	A0A384AYC9	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Ribonuclease 3 isoform X1.	0.914
DDX5	LDLRAD4	A0A383ZLP1	A0A384B9D8	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	LOW QUALITY PROTEIN: low-density lipoprotein receptor class A domain-containing protein 4.	0.466
DDX5	PMEPA1	A0A383ZLP1	A0A384ADB5	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Protein TMEPAI isoform X1.	0.466
DROSHA	DDX5	A0A384AYC9	A0A383ZLP1	Ribonuclease 3 isoform X1.	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.914
DROSHA	LOC102997132	A0A384AYC9	A0A452C902	Ribonuclease 3 isoform X1.	LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.591
FOXH1	SMAD3	A0A384AE40	A0A383YTC5	Forkhead box protein H1.	Mothers against decapentaplegic homolog.	0.803
FOXH1	SMAD4	A0A384AE40	A0A384BC65	Forkhead box protein H1.	Mothers against decapentaplegic homolog.	0.749
FOXH1	TRIM33	A0A384AE40	A0A383Z3E7	Forkhead box protein H1.	E3 ubiquitin-protein ligase TRIM33.	0.413
LDLRAD4	DDX5	A0A384B9D8	A0A383ZLP1	LOW QUALITY PROTEIN: low-density lipoprotein receptor class A domain-containing protein 4.	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.466
LDLRAD4	LOC102997132	A0A384B9D8	A0A452C902	LOW QUALITY PROTEIN: low-density lipoprotein receptor class A domain-containing protein 4.	LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.466
LDLRAD4	SMAD3	A0A384B9D8	A0A383YTC5	LOW QUALITY PROTEIN: low-density lipoprotein receptor class A domain-containing protein 4.	Mothers against decapentaplegic homolog.	0.526
LOC102997132	DROSHA	A0A452C902	A0A384AYC9	LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Ribonuclease 3 isoform X1.	0.591
LOC102997132	LDLRAD4	A0A452C902	A0A384B9D8	LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	LOW QUALITY PROTEIN: low-density lipoprotein receptor class A domain-containing protein 4.	0.466
LOC102997132	PMEPA1	A0A452C902	A0A384ADB5	LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Protein TMEPAI isoform X1.	0.466
LOC103001311	LOC103014668	A0A383YPZ9	A0A383YNL1	Transcription factor AP-1-like.	Transcription factor AP-1; Belongs to the bZIP family.	0.902
LOC103001311	SMAD3	A0A383YPZ9	A0A383YTC5	Transcription factor AP-1-like.	Mothers against decapentaplegic homolog.	0.544
LOC103001311	SMAD4	A0A383YPZ9	A0A384BC65	Transcription factor AP-1-like.	Mothers against decapentaplegic homolog.	0.426
LOC103014668	LOC103001311	A0A383YNL1	A0A383YPZ9	Transcription factor AP-1; Belongs to the bZIP family.	Transcription factor AP-1-like.	0.902
LOC103014668	SMAD3	A0A383YNL1	A0A383YTC5	Transcription factor AP-1; Belongs to the bZIP family.	Mothers against decapentaplegic homolog.	0.544