STRINGSTRING
LOC114236017 LOC114236017 LOC103008079 LOC103008079 POLR2K POLR2K POLRMT POLRMT TAF2 TAF2 LOC103020561 LOC103020561 PRIM1 PRIM1 POLR2D POLR2D TAF1 TAF1 PEX2 PEX2 TAF4 TAF4 RECQL5 RECQL5 POLR2J POLR2J GTF2F2 GTF2F2 PRIM2 PRIM2 LOC103016635 LOC103016635 LAP3 LAP3 GTF2A1 GTF2A1 POLR3H POLR3H GTF2H3 GTF2H3 POLR3E POLR3E GTF2A1L GTF2A1L CDC73 CDC73 RO60 RO60 POLR3F POLR3F POLI POLI MNAT1 MNAT1 PEPD PEPD POLR3G POLR3G RPRD1B RPRD1B CCNH CCNH POLR1C POLR1C SUPT3H SUPT3H GTF2H4 GTF2H4 LEO1 LEO1 POLR2H POLR2H POLR1E POLR1E TAF4B TAF4B TAF5L TAF5L TAF8 TAF8 POLR2L POLR2L POLR1D POLR1D PGM1 PGM1 TWISTNB TWISTNB POLR2I POLR2I POLR2B POLR2B CUNH22orf23 CUNH22orf23 POLR2M POLR2M GTF2A2 GTF2A2 POLR2A POLR2A POLR3A POLR3A RPRD1A RPRD1A DHX57 DHX57 TAF3 TAF3 POLR2C POLR2C POLR3D POLR3D CD3EAP CD3EAP TCEA1 TCEA1 GTF2F1 GTF2F1 WDR47 WDR47 RPAP2 RPAP2 SH3BP5L SH3BP5L POLA2 POLA2 WDR61 WDR61 GTF2E2 GTF2E2 POLR2G POLR2G CTR9 CTR9 POLR1A POLR1A LOC103000259 LOC103000259 TAF9 TAF9 CDK7 CDK7 CINP CINP POLR2E POLR2E LOC103015962 LOC103015962 ZNRD1 ZNRD1 LOC103004512 LOC103004512 PAF1 PAF1 RTF1 RTF1 POLA1 POLA1 POLR3K POLR3K GTF2E1 GTF2E1 POLR3C POLR3C
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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LOC114236017Protein POLR1D-like. (122 aa)
LOC103008079LOW QUALITY PROTEIN: transcription initiation protein SPT3 homolog. (235 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
POLRMTDNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1224 aa)
TAF2Transcription initiation factor TFIID subunit 2 isoform X1. (1308 aa)
LOC103020561LOW QUALITY PROTEIN: CDK-activating kinase assembly factor MAT1-like. (454 aa)
PRIM1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (416 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (104 aa)
TAF1Transcription initiation factor TFIID subunit. (1902 aa)
PEX2Peroxisome biogenesis factor 2. (305 aa)
TAF4Transcription initiation factor TFIID subunit 4. (733 aa)
RECQL5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (984 aa)
POLR2JDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
PRIM2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (506 aa)
LOC103016635LOW QUALITY PROTEIN: uroplakin-3b-like protein 1. (254 aa)
LAP3Cytosol aminopeptidase. (488 aa)
GTF2A1Transcription initiation factor IIA subunit 1. (336 aa)
POLR3HDNA-directed RNA polymerase III subunit RPC8. (204 aa)
GTF2H3General transcription factor IIH subunit 3. (309 aa)
POLR3EDNA-directed RNA polymerase III subunit RPC5 isoform X1. (711 aa)
GTF2A1LTFIIA-alpha and beta-like factor. (477 aa)
CDC73Parafibromin. (531 aa)
RO6060 kDa SS-A/Ro ribonucleoprotein isoform X1. (538 aa)
POLR3FDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (323 aa)
POLIDNA polymerase iota isoform X2. (727 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
PEPDxaa-Pro dipeptidase. (429 aa)
POLR3GDNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (223 aa)
RPRD1BRegulation of nuclear pre-mRNA domain-containing protein 1B isoform X1. (326 aa)
CCNHcyclin-H isoform X1; Belongs to the cyclin family. (328 aa)
POLR1CDNA-directed RNA polymerases I and III subunit RPAC1 isoform X1. (346 aa)
SUPT3HTranscription initiation protein SPT3 homolog. (373 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
LEO1RNA polymerase-associated protein LEO1. (666 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
POLR1EDNA-directed RNA polymerase I subunit RPA49. (419 aa)
TAF4BTranscription initiation factor TFIID subunit 4B isoform X1. (862 aa)
TAF5LTAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L. (588 aa)
TAF8Transcription initiation factor TFIID subunit 8. (292 aa)
POLR2LDNA-directed RNA polymerases I, II, and III subunit RPABC5. (58 aa)
POLR1DDNA-directed RNA polymerases I and III subunit RPAC2. (133 aa)
PGM1Phosphoglucomutase-1 isoform X1; Belongs to the phosphohexose mutase family. (580 aa)
TWISTNBDNA-directed RNA polymerase I subunit RPA43. (332 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
CUNH22orf23UPF0193 protein EVG1 isoform X1. (251 aa)
POLR2MProtein GRINL1A. (370 aa)
GTF2A2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1963 aa)
POLR3ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1402 aa)
RPRD1ARegulation of nuclear pre-mRNA domain-containing protein 1A isoform X1. (312 aa)
DHX57Putative ATP-dependent RNA helicase DHX57 isoform X1. (1389 aa)
TAF3Transcription initiation factor TFIID subunit 3. (926 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3 isoform X1. (275 aa)
POLR3DDNA-directed RNA polymerase III subunit RPC4. (398 aa)
CD3EAPDNA-directed RNA polymerase I subunit RPA34. (532 aa)
TCEA1Transcription elongation factor A protein 1. (266 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (518 aa)
WDR47WD repeat-containing protein 47 isoform X1. (922 aa)
RPAP2Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1. (611 aa)
SH3BP5LSH3 domain-binding protein 5-like. (385 aa)
POLA2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (598 aa)
WDR61WD repeat-containing protein 61. (305 aa)
GTF2E2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (306 aa)
POLR2GDNA-directed RNA polymerase II subunit RPB7. (172 aa)
CTR9RNA polymerase-associated protein CTR9 homolog. (1179 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1717 aa)
LOC103000259General transcription factor IIH subunit. (395 aa)
TAF9Transcription initiation factor TFIID subunit 9. (265 aa)
CDK7Cyclin-dependent kinase 7 isoform X1; Belongs to the protein kinase superfamily. (346 aa)
CINPCyclin-dependent kinase 2-interacting protein isoform X1. (222 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
LOC103015962DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
ZNRD1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (123 aa)
LOC103004512UPF0193 protein EVG1-like isoform X1. (216 aa)
PAF1RNA polymerase II-associated factor 1 homolog. (526 aa)
RTF1RNA polymerase-associated protein RTF1 homolog. (710 aa)
POLA1LOW QUALITY PROTEIN: DNA polymerase alpha catalytic subunit. (1468 aa)
POLR3KDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
GTF2E1General transcription factor IIE subunit 1 isoform X1. (439 aa)
POLR3CRNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (534 aa)
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni
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