(8 nodes) Prespliceosome network (Balaenoptera acutorostrata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LUC7L	Putative RNA-binding protein Luc7-like 1 isoform X1. (354 aa)
	SF3A1	Splicing factor 3A subunit 1. (793 aa)
	LUC7L3	LOW QUALITY PROTEIN: luc7-like protein 3. (491 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	UHRF1BP1	UHRF1-binding protein 1 isoform X1. (1443 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
	LOC103015468	Putative RNA-binding protein Luc7-like 2 isoform X1. (448 aa)
	PRPF40A	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A. (1035 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103015468	LUC7L3	A0A452CDD9	A0A383ZNP6	Putative RNA-binding protein Luc7-like 2 isoform X1.	LOW QUALITY PROTEIN: luc7-like protein 3.	0.499
LOC103015468	SF3A1	A0A452CDD9	A0A383Z6H7	Putative RNA-binding protein Luc7-like 2 isoform X1.	Splicing factor 3A subunit 1.	0.464
LOC103015468	SNRPB	A0A452CDD9	A0A384B9C2	Putative RNA-binding protein Luc7-like 2 isoform X1.	Small nuclear ribonucleoprotein-associated protein.	0.482
LOC103015468	SNRPC	A0A452CDD9	A0A384BF54	Putative RNA-binding protein Luc7-like 2 isoform X1.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.867
LUC7L	LUC7L3	A0A384A3F2	A0A383ZNP6	Putative RNA-binding protein Luc7-like 1 isoform X1.	LOW QUALITY PROTEIN: luc7-like protein 3.	0.520
LUC7L	PRPF40A	A0A384A3F2	A0A452CHT8	Putative RNA-binding protein Luc7-like 1 isoform X1.	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A.	0.402
LUC7L	SF3A1	A0A384A3F2	A0A383Z6H7	Putative RNA-binding protein Luc7-like 1 isoform X1.	Splicing factor 3A subunit 1.	0.464
LUC7L	SNRPB	A0A384A3F2	A0A384B9C2	Putative RNA-binding protein Luc7-like 1 isoform X1.	Small nuclear ribonucleoprotein-associated protein.	0.482
LUC7L	SNRPC	A0A384A3F2	A0A384BF54	Putative RNA-binding protein Luc7-like 1 isoform X1.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.867
LUC7L3	LOC103015468	A0A383ZNP6	A0A452CDD9	LOW QUALITY PROTEIN: luc7-like protein 3.	Putative RNA-binding protein Luc7-like 2 isoform X1.	0.499
LUC7L3	LUC7L	A0A383ZNP6	A0A384A3F2	LOW QUALITY PROTEIN: luc7-like protein 3.	Putative RNA-binding protein Luc7-like 1 isoform X1.	0.520
LUC7L3	PRPF40A	A0A383ZNP6	A0A452CHT8	LOW QUALITY PROTEIN: luc7-like protein 3.	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A.	0.834
LUC7L3	SF3A1	A0A383ZNP6	A0A383Z6H7	LOW QUALITY PROTEIN: luc7-like protein 3.	Splicing factor 3A subunit 1.	0.478
LUC7L3	SNRPB	A0A383ZNP6	A0A384B9C2	LOW QUALITY PROTEIN: luc7-like protein 3.	Small nuclear ribonucleoprotein-associated protein.	0.482
LUC7L3	SNRPC	A0A383ZNP6	A0A384BF54	LOW QUALITY PROTEIN: luc7-like protein 3.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.746
PRPF40A	LUC7L	A0A452CHT8	A0A384A3F2	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A.	Putative RNA-binding protein Luc7-like 1 isoform X1.	0.402
PRPF40A	LUC7L3	A0A452CHT8	A0A383ZNP6	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A.	LOW QUALITY PROTEIN: luc7-like protein 3.	0.834
PRPF40A	SF3A1	A0A452CHT8	A0A383Z6H7	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A.	Splicing factor 3A subunit 1.	0.814
SF3A1	LOC103015468	A0A383Z6H7	A0A452CDD9	Splicing factor 3A subunit 1.	Putative RNA-binding protein Luc7-like 2 isoform X1.	0.464
SF3A1	LUC7L	A0A383Z6H7	A0A384A3F2	Splicing factor 3A subunit 1.	Putative RNA-binding protein Luc7-like 1 isoform X1.	0.464