Groups of genes that are frequently observed in each other's genomic neighborhood.
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Databases
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
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Fusion
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CBX1
Chromobox protein homolog 1. (185 aa)
CBX5
Chromobox protein homolog 5. (191 aa)
CBX3
Chromobox protein homolog 3. (183 aa)
CBX6
Chromobox protein homolog 6 isoform X1. (415 aa)
CBX7
Chromobox protein homolog 7 isoform X1. (251 aa)
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752 Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni