27 items (Balaenoptera acutorostrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SKIL	Ski-like protein isoform X2. (684 aa)
	MAPK1	Mitogen-activated protein kinase 1. (263 aa)
	SMAD2	Mothers against decapentaplegic homolog. (467 aa)
	SMAD4	Mothers against decapentaplegic homolog. (553 aa)
	LOC103011160	Ubiquitin-like. (144 aa)
	NCOR2	Nuclear receptor corepressor 2. (2331 aa)
	UBA52	ubiquitin-60S ribosomal protein L40. (128 aa)
	TGIF2	Homeobox protein TGIF2. (237 aa)
	PPM1A	Protein phosphatase 1A isoform X1. (382 aa)
	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like isoform X1. (993 aa)
	TGIF1	Homeobox protein TGIF1 isoform X2. (272 aa)
	RPS27A	ubiquitin-40S ribosomal protein S27a. (156 aa)
	UBC	polyubiquitin-C. (609 aa)
	MAPK3	Mitogen-activated protein kinase 3. (265 aa)
	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1; Belongs to the peptidase C19 family. (2577 aa)
	SMURF2	E3 ubiquitin-protein ligase. (735 aa)
	LOC103015599	Probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1; Belongs to the peptidase C19 family. (2559 aa)
	SNW1	SNW domain-containing protein 1 isoform X1. (536 aa)
	ATP1B4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (357 aa)
	UBE2D1	Ubiquitin-conjugating enzyme E2 D1 isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	UBB	polyubiquitin-B. (305 aa)
	NCOR1	Nuclear receptor corepressor 1. (2433 aa)
	HDAC1	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (482 aa)
	TRIM33	E3 ubiquitin-protein ligase TRIM33. (1088 aa)
	PARP1	Poly [ADP-ribose] polymerase. (1021 aa)
	SKI	Ski oncogene. (772 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP1B4	MAPK1	A0A383ZU73	A0A384B9K1	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	Mitogen-activated protein kinase 1.	0.900
ATP1B4	MAPK3	A0A383ZU73	A0A384AGR0	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	Mitogen-activated protein kinase 3.	0.900
ATP1B4	SNW1	A0A383ZU73	A0A384AB86	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	SNW domain-containing protein 1 isoform X1.	0.917
HDAC1	NCOR1	A0A383Z721	A0A383ZG85	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Nuclear receptor corepressor 1.	0.955
HDAC1	NCOR2	A0A383Z721	A0A452CMA4	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Nuclear receptor corepressor 2.	0.801
HDAC1	PARP1	A0A383Z721	A0A383YWJ2	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Poly [ADP-ribose] polymerase.	0.561
HDAC1	SMAD2	A0A383Z721	A0A384BC53	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Mothers against decapentaplegic homolog.	0.693
HDAC1	SMAD3	A0A383Z721	A0A383YTC5	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Mothers against decapentaplegic homolog.	0.640
HDAC1	SMAD4	A0A383Z721	A0A384BC65	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Mothers against decapentaplegic homolog.	0.558
HDAC1	SNW1	A0A383Z721	A0A384AB86	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	SNW domain-containing protein 1 isoform X1.	0.470
HDAC1	TGIF1	A0A383Z721	A0A384AW92	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Homeobox protein TGIF1 isoform X2.	0.495
HDAC1	TGIF2	A0A383Z721	A0A384B0S0	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Homeobox protein TGIF2.	0.447
HDAC1	UBA52	A0A383Z721	A0A384B8B2	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	ubiquitin-60S ribosomal protein L40.	0.423
LOC103011160	LOC103015599	A0A452CF51	A0A384ACM9	Ubiquitin-like.	Probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1; Belongs to the peptidase C19 family.	0.555
LOC103011160	NEDD4L	A0A452CF51	A0A384AXA1	Ubiquitin-like.	E3 ubiquitin-protein ligase NEDD4-like isoform X1.	0.748
LOC103011160	PARP1	A0A452CF51	A0A383YWJ2	Ubiquitin-like.	Poly [ADP-ribose] polymerase.	0.419
LOC103011160	SKI	A0A452CF51	A0A383YU28	Ubiquitin-like.	Ski oncogene.	0.416
LOC103011160	SKIL	A0A452CF51	A0A384BCX5	Ubiquitin-like.	Ski-like protein isoform X2.	0.405
LOC103011160	SMAD2	A0A452CF51	A0A384BC53	Ubiquitin-like.	Mothers against decapentaplegic homolog.	0.400
LOC103011160	SMAD4	A0A452CF51	A0A384BC65	Ubiquitin-like.	Mothers against decapentaplegic homolog.	0.461