57 items (Balaenoptera acutorostrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103003809	Small ubiquitin-related modifier 2-like. (75 aa)
	RBX1	E3 ubiquitin-protein ligase RBX1. (108 aa)
	LOC103015513	Small ubiquitin-related modifier. (95 aa)
	NFATC2IP	NFATC2-interacting protein. (418 aa)
	GTF2H5	General transcription factor IIH subunit 5. (71 aa)
	KCTD2	BTB/POZ domain-containing protein KCTD2. (224 aa)
	CETN2	Centrin-2. (204 aa)
	XPC	DNA repair protein complementing XP-C cells. (962 aa)
	ERCC3	General transcription and DNA repair factor IIH helicase subunit XPB. (782 aa)
	CHD1L	chromodomain-helicase-DNA-binding protein 1-like isoform X1. (904 aa)
	PIAS3	E3 SUMO-protein ligase PIAS3 isoform X1. (628 aa)
	UBE2I	SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	MEIOB	Meiosis-specific with OB domain-containing protein isoform X1. (471 aa)
	DDB2	DNA damage-binding protein 2 isoform X1. (457 aa)
	PARP2	Poly [ADP-ribose] polymerase. (564 aa)
	CUL4B	LOW QUALITY PROTEIN: cullin-4B; Belongs to the cullin family. (893 aa)
	RAD23B	UV excision repair protein RAD23 homolog B. (452 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (617 aa)
	CDK7	Cyclin-dependent kinase 7 isoform X1; Belongs to the protein kinase superfamily. (346 aa)
	LOC103000259	General transcription factor IIH subunit. (395 aa)
	VWA5B1	Von Willebrand factor A domain-containing protein 5B1. (1221 aa)
	GTF2H1	General transcription factor IIH subunit 1 isoform X1. (548 aa)
	DDB1	DNA damage-binding protein 1. (1140 aa)
	UBB	polyubiquitin-B. (305 aa)
	SUMO3	Small ubiquitin-related modifier 3. (204 aa)
	RAD23A	UV excision repair protein RAD23 homolog A isoform X1. (363 aa)
	VTCN1	V-set domain-containing T-cell activation inhibitor 1. (283 aa)
	USP45	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (816 aa)
	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2. (105 aa)
	ERCC2	General transcription and DNA repair factor IIH helicase subunit XPD. (760 aa)
	XPA	DNA repair protein complementing XP-A cells. (273 aa)
	PARP1	Poly [ADP-ribose] polymerase. (1021 aa)
	UBE2N	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (224 aa)
	RNF111	E3 ubiquitin-protein ligase Arkadia isoform X1. (1028 aa)
	RPA3	Replication protein A 14 kDa subunit isoform X1. (121 aa)
	LOC103001445	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 N-like; Belongs to the ubiquitin-conjugating enzyme family. (142 aa)
	LOC103020561	LOW QUALITY PROTEIN: CDK-activating kinase assembly factor MAT1-like. (454 aa)
	SUMO2	Small ubiquitin-related modifier. (111 aa)
	LOC103011160	Ubiquitin-like. (144 aa)
	PARP3	Poly [ADP-ribose] polymerase. (470 aa)
	WDR76	WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (632 aa)
	VWA5B2	Von Willebrand factor A domain-containing protein 5B2 isoform X1. (1295 aa)
	ERCC1	DNA excision repair protein ERCC-1. (294 aa)
	ERCC5	DNA repair protein complementing XP-G cells isoform X1. (1201 aa)
	BIVM	Basic immunoglobulin-like variable motif-containing protein isoform X3. (504 aa)
	CUL4A	cullin-4A; Belongs to the cullin family. (637 aa)
	UBA52	ubiquitin-60S ribosomal protein L40. (128 aa)
	KXD1	kxDL motif-containing protein 1. (176 aa)
	GTF2H4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
	CCNH	cyclin-H isoform X1; Belongs to the cyclin family. (328 aa)
	CETN3	Centrin-3. (167 aa)
	MNAT1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
	LOC103016861	Small ubiquitin-related modifier 2-like. (76 aa)
	SUMO1	Small ubiquitin-related modifier. (101 aa)
	RPS27A	ubiquitin-40S ribosomal protein S27a. (156 aa)
	UBC	polyubiquitin-C. (609 aa)
	GTF2H3	General transcription factor IIH subunit 3. (309 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BIVM	CCNH	A0A384BAY5	A0A384B1D0	Basic immunoglobulin-like variable motif-containing protein isoform X3.	cyclin-H isoform X1; Belongs to the cyclin family.	0.545
BIVM	CDK7	A0A384BAY5	A0A383ZLS3	Basic immunoglobulin-like variable motif-containing protein isoform X3.	Cyclin-dependent kinase 7 isoform X1; Belongs to the protein kinase superfamily.	0.403
BIVM	CETN2	A0A384BAY5	A0A384A8C8	Basic immunoglobulin-like variable motif-containing protein isoform X3.	Centrin-2.	0.601
BIVM	CHD1L	A0A384BAY5	A0A384A4M5	Basic immunoglobulin-like variable motif-containing protein isoform X3.	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	0.815
BIVM	CUL4A	A0A384BAY5	A0A384BAU8	Basic immunoglobulin-like variable motif-containing protein isoform X3.	cullin-4A; Belongs to the cullin family.	0.561
BIVM	CUL4B	A0A384BAY5	A0A383ZUC6	Basic immunoglobulin-like variable motif-containing protein isoform X3.	LOW QUALITY PROTEIN: cullin-4B; Belongs to the cullin family.	0.504
BIVM	DDB1	A0A384BAY5	A0A383ZHE8	Basic immunoglobulin-like variable motif-containing protein isoform X3.	DNA damage-binding protein 1.	0.652
BIVM	DDB2	A0A384BAY5	A0A384A1J7	Basic immunoglobulin-like variable motif-containing protein isoform X3.	DNA damage-binding protein 2 isoform X1.	0.554
BIVM	ERCC1	A0A384BAY5	A0A383YZ87	Basic immunoglobulin-like variable motif-containing protein isoform X3.	DNA excision repair protein ERCC-1.	0.710
BIVM	ERCC2	A0A384BAY5	A0A383YZV3	Basic immunoglobulin-like variable motif-containing protein isoform X3.	General transcription and DNA repair factor IIH helicase subunit XPD.	0.887
BIVM	ERCC3	A0A384BAY5	A0A384A6C9	Basic immunoglobulin-like variable motif-containing protein isoform X3.	General transcription and DNA repair factor IIH helicase subunit XPB.	0.891
BIVM	ERCC5	A0A384BAY5	A0A384BBJ4	Basic immunoglobulin-like variable motif-containing protein isoform X3.	DNA repair protein complementing XP-G cells isoform X1.	0.833
BIVM	GTF2H1	A0A384BAY5	A0A383ZIH5	Basic immunoglobulin-like variable motif-containing protein isoform X3.	General transcription factor IIH subunit 1 isoform X1.	0.900
BIVM	GTF2H3	A0A384BAY5	A0A384AQN1	Basic immunoglobulin-like variable motif-containing protein isoform X3.	General transcription factor IIH subunit 3.	0.620
BIVM	GTF2H4	A0A384BAY5	A0A384B3D3	Basic immunoglobulin-like variable motif-containing protein isoform X3.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.523
BIVM	GTF2H5	A0A384BAY5	A0A384AFR8	Basic immunoglobulin-like variable motif-containing protein isoform X3.	General transcription factor IIH subunit 5.	0.635
BIVM	LOC103000259	A0A384BAY5	A0A383ZLM6	Basic immunoglobulin-like variable motif-containing protein isoform X3.	General transcription factor IIH subunit.	0.799
BIVM	LOC103001445	A0A384BAY5	A0A452CNC7	Basic immunoglobulin-like variable motif-containing protein isoform X3.	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 N-like; Belongs to the ubiquitin-conjugating enzyme family.	0.418
BIVM	LOC103011160	A0A384BAY5	A0A452CF51	Basic immunoglobulin-like variable motif-containing protein isoform X3.	Ubiquitin-like.	0.404
BIVM	MEIOB	A0A384BAY5	A0A384A317	Basic immunoglobulin-like variable motif-containing protein isoform X3.	Meiosis-specific with OB domain-containing protein isoform X1.	0.551