STRINGSTRING
MLLT3 MLLT3 POLR2E POLR2E GTF2B GTF2B CINP CINP SUPT4H1 SUPT4H1 CDK7 CDK7 TAF9 TAF9 LOC103000259 LOC103000259 EAF2 EAF2 ELOA ELOA CTR9 CTR9 TCEA3 TCEA3 GTF2H1 GTF2H1 POLR2G POLR2G SUPT16H SUPT16H GTF2E2 GTF2E2 WDR61 WDR61 TAF10 TAF10 CUNH11orf88 CUNH11orf88 CTDP1 CTDP1 NCBP2 NCBP2 TAF12 TAF12 TAF13 TAF13 MLLT1 MLLT1 GTF2F1 GTF2F1 TCEA1 TCEA1 ERCC2 ERCC2 PRF1 PRF1 POLR2C POLR2C TAF3 TAF3 EAF1 EAF1 KHDC3L KHDC3L POLR2A POLR2A TBPL1 TBPL1 CDC73 CDC73 CCNT2 CCNT2 MNAT1 MNAT1 TBPL2 TBPL2 CCNH CCNH LOC103010655 LOC103010655 GTF2H4 GTF2H4 CUNH6orf15 CUNH6orf15 NELFE NELFE CDK9 CDK9 LEO1 LEO1 POLR2H POLR2H ELL ELL NCBP1 NCBP1 TAF4B TAF4B TAF11 TAF11 SSRP1 SSRP1 POLR2L POLR2L POLR2K POLR2K CCNK CCNK TAF7L TAF7L ELOB ELOB IWS1 IWS1 GTF2A2 GTF2A2 POLR2B POLR2B POLR2I POLR2I TCEANC2 TCEANC2 GTF2A1L GTF2A1L TAF15 TAF15 GTF2H3 GTF2H3 GTF2A1 GTF2A1 TAF6 TAF6 LOC103016635 LOC103016635 POLR2F POLR2F TAF2 TAF2 AFF4 AFF4 TAF5 TAF5 NELFCD NELFCD LOC103020561 LOC103020561 RTF1 RTF1 TCEANC TCEANC PAF1 PAF1 SUPT5H SUPT5H CCNT1 CCNT1 LOC103015962 LOC103015962 SLC39A13 SLC39A13 NELFA NELFA GTF2E1 GTF2E1 ERCC3 ERCC3 NELFB NELFB POLR2D POLR2D CCNQ CCNQ TAF1 TAF1 SUPT6H SUPT6H TAF9B TAF9B ELOC ELOC TCEA2 TCEA2 TAF4 TAF4 TBP TBP GTF2H5 GTF2H5 POLR2J POLR2J GTF2F2 GTF2F2 AFF1 AFF1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MLLT3LOW QUALITY PROTEIN: protein AF-9. (605 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
GTF2BTranscription initiation factor IIB. (316 aa)
CINPCyclin-dependent kinase 2-interacting protein isoform X1. (222 aa)
SUPT4H1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
CDK7Cyclin-dependent kinase 7 isoform X1; Belongs to the protein kinase superfamily. (346 aa)
TAF9Transcription initiation factor TFIID subunit 9. (265 aa)
LOC103000259General transcription factor IIH subunit. (395 aa)
EAF2ELL-associated factor 2. (264 aa)
ELOAelongin-A. (767 aa)
CTR9RNA polymerase-associated protein CTR9 homolog. (1179 aa)
TCEA3Transcription elongation factor A protein 3. (346 aa)
GTF2H1General transcription factor IIH subunit 1 isoform X1. (548 aa)
POLR2GDNA-directed RNA polymerase II subunit RPB7. (172 aa)
SUPT16HFACT complex subunit SPT16. (1047 aa)
GTF2E2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (306 aa)
WDR61WD repeat-containing protein 61. (305 aa)
TAF10Transcription initiation factor TFIID subunit 10. (177 aa)
CUNH11orf88UPF0722 protein C11orf88 homolog isoform X1. (168 aa)
CTDP1RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (765 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
TAF12Transcription initiation factor TFIID subunit 12 isoform X1. (213 aa)
TAF13Transcription initiation factor TFIID subunit 13. (124 aa)
MLLT1Protein ENL. (553 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (518 aa)
TCEA1Transcription elongation factor A protein 1. (266 aa)
ERCC2General transcription and DNA repair factor IIH helicase subunit XPD. (760 aa)
PRF1Perforin-1. (555 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3 isoform X1. (275 aa)
TAF3Transcription initiation factor TFIID subunit 3. (926 aa)
EAF1ELL-associated factor 1. (268 aa)
KHDC3LKHDC3-like protein. (203 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1963 aa)
TBPL1TATA box-binding protein-like protein 1. (186 aa)
CDC73Parafibromin. (531 aa)
CCNT2cyclin-T2 isoform X1; Belongs to the cyclin family. (745 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
TBPL2TATA box-binding protein-like protein 2. (449 aa)
CCNHcyclin-H isoform X1; Belongs to the cyclin family. (328 aa)
LOC103010655Transcription initiation factor TFIID subunit 7. (349 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
CUNH6orf15Uncharacterized protein C6orf15 homolog. (317 aa)
NELFENegative elongation factor E isoform X4. (419 aa)
CDK9Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (372 aa)
LEO1RNA polymerase-associated protein LEO1. (666 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ELLRNA polymerase II elongation factor ELL. (612 aa)
NCBP1Nuclear cap-binding protein subunit 1 isoform X1. (790 aa)
TAF4BTranscription initiation factor TFIID subunit 4B isoform X1. (862 aa)
TAF11Transcription initiation factor TFIID subunit 11 isoform X1. (211 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (712 aa)
POLR2LDNA-directed RNA polymerases I, II, and III subunit RPABC5. (58 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
CCNKcyclin-K; Belongs to the cyclin family. (410 aa)
TAF7LTranscription initiation factor TFIID subunit 7-like isoform X1. (454 aa)
ELOBelongin-B. (113 aa)
IWS1LOW QUALITY PROTEIN: protein IWS1 homolog. (820 aa)
GTF2A2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
TCEANC2Transcription elongation factor A N-terminal and central domain-containing protein 2. (208 aa)
GTF2A1LTFIIA-alpha and beta-like factor. (477 aa)
TAF15LOW QUALITY PROTEIN: TATA-binding protein-associated factor 2N. (575 aa)
GTF2H3General transcription factor IIH subunit 3. (309 aa)
GTF2A1Transcription initiation factor IIA subunit 1. (336 aa)
TAF6Transcription initiation factor TFIID subunit 6. (666 aa)
LOC103016635LOW QUALITY PROTEIN: uroplakin-3b-like protein 1. (254 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2. (115 aa)
TAF2Transcription initiation factor TFIID subunit 2 isoform X1. (1308 aa)
AFF4LOW QUALITY PROTEIN: AF4/FMR2 family member 4. (1164 aa)
TAF5Transcription initiation factor TFIID subunit 5 isoform X1. (851 aa)
NELFCDNegative elongation factor C/D. (533 aa)
LOC103020561LOW QUALITY PROTEIN: CDK-activating kinase assembly factor MAT1-like. (454 aa)
RTF1RNA polymerase-associated protein RTF1 homolog. (710 aa)
TCEANCTranscription elongation factor A N-terminal and central domain-containing protein. (352 aa)
PAF1RNA polymerase II-associated factor 1 homolog. (526 aa)
SUPT5HTranscription elongation factor SPT5. (1083 aa)
CCNT1cyclin-T1 isoform X1; Belongs to the cyclin family. (727 aa)
LOC103015962DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
SLC39A13Zinc transporter ZIP13. (364 aa)
NELFANegative elongation factor A. (451 aa)
GTF2E1General transcription factor IIE subunit 1 isoform X1. (439 aa)
ERCC3General transcription and DNA repair factor IIH helicase subunit XPB. (782 aa)
NELFBLOW QUALITY PROTEIN: negative elongation factor B. (761 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (104 aa)
CCNQcyclin-Q isoform X1; Belongs to the cyclin family. (202 aa)
TAF1Transcription initiation factor TFIID subunit. (1902 aa)
SUPT6HTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1726 aa)
TAF9BTranscription initiation factor TFIID subunit 9B. (246 aa)
ELOCelongin-C; Belongs to the SKP1 family. (112 aa)
TCEA2Transcription elongation factor A protein 2. (273 aa)
TAF4Transcription initiation factor TFIID subunit 4. (733 aa)
TBPTATA-box-binding protein isoform X1. (317 aa)
GTF2H5General transcription factor IIH subunit 5. (71 aa)
POLR2JDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
AFF1AF4/FMR2 family member 1 isoform X1. (1230 aa)
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni
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