STRINGSTRING
LOC114238515 LOC114238515 PPP1R42 PPP1R42 HMGN1 HMGN1 LOC103011160 LOC103011160 POLR2K POLR2K LOC102999414 LOC102999414 LOC103016069 LOC103016069 LOC114235986 LOC114235986 POLR2L POLR2L LOC103006878 LOC103006878 XPA XPA CUL4A CUL4A UBA52 UBA52 KXD1 KXD1 POLR2H POLR2H GTF2H4 GTF2H4 CCNH CCNH MNAT1 MNAT1 LOC103008595 LOC103008595 ZNF830 ZNF830 RPS27A RPS27A UBC UBC GTF2H3 GTF2H3 RBX1 RBX1 USP7 USP7 LOC103016635 LOC103016635 POLR2J POLR2J COPS6 COPS6 GTF2H5 GTF2H5 GPS1 GPS1 TCEA2 TCEA2 COPS5 COPS5 COPS8 COPS8 COPS7B COPS7B POLR2D POLR2D ERCC3 ERCC3 LOC103006290 LOC103006290 UVSSA UVSSA NRDE2 NRDE2 AQR AQR TCEANC TCEANC ISY1 ISY1 LOC103015962 LOC103015962 POLR2G POLR2G DDB1 DDB1 PRPF19 PRPF19 COPS3 COPS3 UBB UBB COPS2 COPS2 COPS7A COPS7A XAB2 XAB2 ERCC6 ERCC6 CUL4B CUL4B POLR2E POLR2E ERCC8 ERCC8 CDK7 CDK7 LOC103000259 LOC103000259 TCEA3 TCEA3 GTF2H1 GTF2H1 LOC103020561 LOC103020561 EP300 EP300 TCEA1 TCEA1 ERCC2 ERCC2 COPS4 COPS4 POLR2C POLR2C POLR2A POLR2A POLR2B POLR2B POLR2I POLR2I PPIE PPIE TCEANC2 TCEANC2 POLR2F POLR2F
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC114238515Non-histone chromosomal protein HMG-14-like. (101 aa)
PPP1R42Protein phosphatase 1 regulatory subunit 42 isoform X1. (357 aa)
HMGN1Non-histone chromosomal protein HMG-14. (192 aa)
LOC103011160Ubiquitin-like. (144 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
LOC102999414Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (235 aa)
LOC103016069Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (287 aa)
LOC114235986LOW QUALITY PROTEIN: non-histone chromosomal protein HMG-14-like. (101 aa)
POLR2LDNA-directed RNA polymerases I, II, and III subunit RPABC5. (58 aa)
LOC103006878Non-histone chromosomal protein HMG-17-like. (90 aa)
XPADNA repair protein complementing XP-A cells. (273 aa)
CUL4Acullin-4A; Belongs to the cullin family. (637 aa)
UBA52ubiquitin-60S ribosomal protein L40. (128 aa)
KXD1kxDL motif-containing protein 1. (176 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
CCNHcyclin-H isoform X1; Belongs to the cyclin family. (328 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
LOC103008595Non-histone chromosomal protein HMG-17. (90 aa)
ZNF830Zinc finger protein 830. (380 aa)
RPS27Aubiquitin-40S ribosomal protein S27a. (156 aa)
UBCpolyubiquitin-C. (609 aa)
GTF2H3General transcription factor IIH subunit 3. (309 aa)
RBX1E3 ubiquitin-protein ligase RBX1. (108 aa)
USP7Ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family. (1055 aa)
LOC103016635LOW QUALITY PROTEIN: uroplakin-3b-like protein 1. (254 aa)
POLR2JDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
COPS6COP9 signalosome complex subunit 6. (308 aa)
GTF2H5General transcription factor IIH subunit 5. (71 aa)
GPS1COP9 signalosome complex subunit 1 isoform X1. (471 aa)
TCEA2Transcription elongation factor A protein 2. (273 aa)
COPS5COP9 signalosome complex subunit 5. (334 aa)
COPS8COP9 signalosome complex subunit 8. (209 aa)
COPS7BCOP9 signalosome complex subunit 7b isoform X1. (343 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (104 aa)
ERCC3General transcription and DNA repair factor IIH helicase subunit XPB. (782 aa)
LOC103006290Non-histone chromosomal protein HMG-14. (101 aa)
UVSSAUV-stimulated scaffold protein A. (679 aa)
NRDE2Protein NRDE2 homolog. (1160 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1485 aa)
TCEANCTranscription elongation factor A N-terminal and central domain-containing protein. (352 aa)
ISY1pre-mRNA-splicing factor ISY1 homolog isoform X1. (296 aa)
LOC103015962DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
POLR2GDNA-directed RNA polymerase II subunit RPB7. (172 aa)
DDB1DNA damage-binding protein 1. (1140 aa)
PRPF19pre-mRNA-processing factor 19. (504 aa)
COPS3COP9 signalosome complex subunit 3. (423 aa)
UBBpolyubiquitin-B. (305 aa)
COPS2COP9 signalosome complex subunit 2 isoform X1. (450 aa)
COPS7ALOW QUALITY PROTEIN: COP9 signalosome complex subunit 7a. (272 aa)
XAB2pre-mRNA-splicing factor SYF1. (853 aa)
ERCC6DNA excision repair protein ERCC-6 isoform X1. (1485 aa)
CUL4BLOW QUALITY PROTEIN: cullin-4B; Belongs to the cullin family. (893 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
ERCC8DNA excision repair protein ERCC-8 isoform X1. (396 aa)
CDK7Cyclin-dependent kinase 7 isoform X1; Belongs to the protein kinase superfamily. (346 aa)
LOC103000259General transcription factor IIH subunit. (395 aa)
TCEA3Transcription elongation factor A protein 3. (346 aa)
GTF2H1General transcription factor IIH subunit 1 isoform X1. (548 aa)
LOC103020561LOW QUALITY PROTEIN: CDK-activating kinase assembly factor MAT1-like. (454 aa)
EP300Histone acetyltransferase p300. (2445 aa)
TCEA1Transcription elongation factor A protein 1. (266 aa)
ERCC2General transcription and DNA repair factor IIH helicase subunit XPD. (760 aa)
COPS4COP9 signalosome complex subunit 4 isoform X1. (406 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3 isoform X1. (275 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1963 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
TCEANC2Transcription elongation factor A N-terminal and central domain-containing protein 2. (208 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2. (115 aa)
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.