37 items (Balaenoptera acutorostrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCBP2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
	TIAL1	Nucleolysin TIAR isoform X1. (353 aa)
	POLR2G	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	GTF2F2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	PTBP1	Polypyrimidine tract-binding protein 1 isoform X1. (557 aa)
	PTBP3	Polypyrimidine tract-binding protein 3 isoform X1. (555 aa)
	LOC103015962	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1. (370 aa)
	LOC103013268	Heterogeneous nuclear ribonucleoprotein A1-like. (335 aa)
	POLR2D	DNA-directed RNA polymerase II subunit RPB4. (104 aa)
	POLR2J	DNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
	TIA1	Nucleolysin TIA-1 isoform X1. (386 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	NCBP1	Nuclear cap-binding protein subunit 1 isoform X1. (790 aa)
	ESRP2	LOW QUALITY PROTEIN: epithelial splicing regulatory protein 2. (790 aa)
	POLR2L	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (58 aa)
	LOC103018047	Heterogeneous nuclear ribonucleoprotein A1-like. (320 aa)
	POLR2K	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
	LOC103019826	LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like. (343 aa)
	LOC114237631	Heterogeneous nuclear ribonucleoprotein A1-like. (204 aa)
	LOC103021080	Heterogeneous nuclear ribonucleoprotein A1-like. (320 aa)
	LOC103010200	LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like. (364 aa)
	LOC103013078	LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like. (314 aa)
	POLR2F	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (115 aa)
	LOC103011987	LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like. (320 aa)
	LOC102997284	Heterogeneous nuclear ribonucleoprotein A1-like. (173 aa)
	ESRP1	Epithelial splicing regulatory protein 1. (677 aa)
	POLR2I	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	POLR2B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	RBFOX2	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (412 aa)
	POLR2A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1963 aa)
	POLR2C	DNA-directed RNA polymerase II subunit RPB3 isoform X1. (275 aa)
	LOC103019337	Heterogeneous nuclear ribonucleoprotein A1. (320 aa)
	HNRNPM	Heterogeneous nuclear ribonucleoprotein M isoform X1. (763 aa)
	GTF2F1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (518 aa)
	PTBP2	Polypyrimidine tract-binding protein 2 isoform X1. (506 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ESRP1	ESRP2	A0A383YQ42	A0A384BG29	Epithelial splicing regulatory protein 1.	LOW QUALITY PROTEIN: epithelial splicing regulatory protein 2.	0.468
ESRP1	HNRNPM	A0A383YQ42	A0A383Z1X2	Epithelial splicing regulatory protein 1.	Heterogeneous nuclear ribonucleoprotein M isoform X1.	0.630
ESRP1	POLR2K	A0A383YQ42	A0A452CAF7	Epithelial splicing regulatory protein 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.557
ESRP1	RBFOX2	A0A383YQ42	A0A383YSB4	Epithelial splicing regulatory protein 1.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.548
ESRP2	ESRP1	A0A384BG29	A0A383YQ42	LOW QUALITY PROTEIN: epithelial splicing regulatory protein 2.	Epithelial splicing regulatory protein 1.	0.468
ESRP2	HNRNPM	A0A384BG29	A0A383Z1X2	LOW QUALITY PROTEIN: epithelial splicing regulatory protein 2.	Heterogeneous nuclear ribonucleoprotein M isoform X1.	0.563
ESRP2	PTBP1	A0A384BG29	A0A383ZNL0	LOW QUALITY PROTEIN: epithelial splicing regulatory protein 2.	Polypyrimidine tract-binding protein 1 isoform X1.	0.400
ESRP2	RBFOX2	A0A384BG29	A0A383YSB4	LOW QUALITY PROTEIN: epithelial splicing regulatory protein 2.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.632
GTF2F1	GTF2F2	A0A383Z1Y3	A0A384AHP8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.996
GTF2F1	LOC103015962	A0A383Z1Y3	A0A383ZVK0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.920
GTF2F1	NCBP1	A0A383Z1Y3	A0A384BCT5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Nuclear cap-binding protein subunit 1 isoform X1.	0.656
GTF2F1	NCBP2	A0A383Z1Y3	A0A383Z9C0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.627
GTF2F1	POLR2A	A0A383Z1Y3	A0A383YUB8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.939
GTF2F1	POLR2B	A0A383Z1Y3	A0A383YR43	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
GTF2F1	POLR2C	A0A383Z1Y3	A0A383YXJ9	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase II subunit RPB3 isoform X1.	0.976
GTF2F1	POLR2D	A0A383Z1Y3	A0A384A6J3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase II subunit RPB4.	0.972
GTF2F1	POLR2E	A0A383Z1Y3	A0A383ZNJ8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.980
GTF2F1	POLR2F	A0A383Z1Y3	A0A452CM26	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.966
GTF2F1	POLR2G	A0A383Z1Y3	A0A383ZHV8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase II subunit RPB7.	0.987
GTF2F1	POLR2H	A0A383Z1Y3	A0A384B6K0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.930