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POLR2H POLR2H POLR2F POLR2F LOC103014512 LOC103014512 SRSF1 SRSF1 LOC103002630 LOC103002630 POLR2K POLR2K LOC114236421 LOC114236421 POLR2L POLR2L SNRPD1 SNRPD1 LOC103008148 LOC103008148 LOC103019213 LOC103019213 ZRSR2 ZRSR2 SF3B3 SF3B3 SNRNP200 SNRNP200 NCBP1 NCBP1 SNRPD3 SNRPD3 SNRPB SNRPB SF3B1 SF3B1 SNRNP35 SNRNP35 GTF2F2 GTF2F2 POLR2J POLR2J LOC103003043 LOC103003043 PRPF6 PRPF6 PRPF8 PRPF8 SF3B6 SF3B6 POLR2D POLR2D SNRNP25 SNRNP25 EFTUD2 EFTUD2 DDX23 DDX23 LOC103015962 LOC103015962 SF3B4 SF3B4 POLR2E POLR2E YBX1 YBX1 DDX42 DDX42 SNRPG SNRPG POLR2G POLR2G SNRNP48 SNRNP48 TXNL4A TXNL4A NCBP2 NCBP2 SF3B5 SF3B5 SF3B2 SF3B2 ZMAT5 ZMAT5 SNRNP40 SNRNP40 RNPC3 RNPC3 GTF2F1 GTF2F1 ZCRB1 ZCRB1 SNRPD2 SNRPD2 POLR2C POLR2C SRSF7 SRSF7 YBX2 YBX2 POLR2A POLR2A PDCD7 PDCD7 SNRPE SNRPE SNRPF SNRPF POLR2B POLR2B POLR2I POLR2I
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
Predicted Interactions
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POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2. (115 aa)
LOC103014512U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2-like. (452 aa)
SRSF1Serine/arginine-rich splicing factor 1 isoform X1. (248 aa)
LOC103002630LOW QUALITY PROTEIN: programmed cell death protein 7-like. (171 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
LOC114236421Small nuclear ribonucleoprotein G-like. (68 aa)
POLR2LDNA-directed RNA polymerases I, II, and III subunit RPABC5. (58 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
LOC103008148Y-box-binding protein 3. (342 aa)
LOC103019213Small nuclear ribonucleoprotein Sm D1-like. (74 aa)
ZRSR2U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (466 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
NCBP1Nuclear cap-binding protein subunit 1 isoform X1. (790 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
SF3B1Splicing factor 3B subunit 1 isoform X1. (1304 aa)
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (246 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
POLR2JDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
LOC103003043Nuclease-sensitive element-binding protein 1. (331 aa)
PRPF6pre-mRNA-processing factor 6. (941 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2335 aa)
SF3B6Splicing factor 3B subunit 6. (125 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (104 aa)
SNRNP25U11/U12 small nuclear ribonucleoprotein 25 kDa protein. (123 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (818 aa)
LOC103015962DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
SF3B4LOW QUALITY PROTEIN: splicing factor 3B subunit 4. (431 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
YBX1Nuclease-sensitive element-binding protein 1. (356 aa)
DDX42ATP-dependent RNA helicase DDX42. (940 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
POLR2GDNA-directed RNA polymerase II subunit RPB7. (172 aa)
SNRNP48U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (340 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SF3B2Splicing factor 3B subunit 2. (898 aa)
ZMAT5Zinc finger matrin-type protein 5. (170 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (358 aa)
RNPC3RNA-binding region-containing protein 3 isoform X1. (517 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (518 aa)
ZCRB1Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (217 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3 isoform X1. (275 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
YBX2Y-box-binding protein 2. (287 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1963 aa)
PDCD7Programmed cell death protein 7. (251 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni
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