19 items (Balaenoptera acutorostrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBX4	T-box transcription factor TBX4. (557 aa)
	WNT9A	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (455 aa)
	TBX5	T-box transcription factor TBX5 isoform X1. (536 aa)
	HOXA13	Homeobox protein Hox-A13. (294 aa)
	ETS1	Protein C-ets-1 isoform X1. (485 aa)
	BMP7	Bone morphogenetic protein 7. (431 aa)
	FGF8	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (244 aa)
	HOXD10	Homeobox protein Hox-D10. (343 aa)
	HOXD13	Homeobox protein Hox-D13. (264 aa)
	HAND2	Heart- and neural crest derivatives-expressed protein 2. (130 aa)
	BMP4	Bone morphogenetic protein 4 isoform X1. (420 aa)
	ETV5	ETS translocation variant 5. (510 aa)
	FGF10	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (210 aa)
	PITX1	Homeobox protein. (199 aa)
	PTCH1	LOW QUALITY PROTEIN: protein patched homolog 1. (1304 aa)
	SMO	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family. (837 aa)
	SHH	LOW QUALITY PROTEIN: sonic hedgehog protein. (271 aa)
	ETV4	ETS translocation variant 4 isoform X1. (456 aa)
	HOXD9	Homeobox protein Hox-D9. (342 aa)

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMP4	BMP7	A0A384B0Y0	A0A384ADG9	Bone morphogenetic protein 4 isoform X1.	Bone morphogenetic protein 7.	0.810
BMP4	FGF10	A0A384B0Y0	A0A384B7G3	Bone morphogenetic protein 4 isoform X1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.768
BMP4	FGF8	A0A384B0Y0	A0A384AJG6	Bone morphogenetic protein 4 isoform X1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.657
BMP4	HAND2	A0A384B0Y0	A0A384AZL3	Bone morphogenetic protein 4 isoform X1.	Heart- and neural crest derivatives-expressed protein 2.	0.491
BMP4	PTCH1	A0A384B0Y0	A0A452CD59	Bone morphogenetic protein 4 isoform X1.	LOW QUALITY PROTEIN: protein patched homolog 1.	0.517
BMP4	SHH	A0A384B0Y0	A0A452CFB9	Bone morphogenetic protein 4 isoform X1.	LOW QUALITY PROTEIN: sonic hedgehog protein.	0.736
BMP4	TBX5	A0A384B0Y0	A0A383Z6Y0	Bone morphogenetic protein 4 isoform X1.	T-box transcription factor TBX5 isoform X1.	0.515
BMP7	BMP4	A0A384ADG9	A0A384B0Y0	Bone morphogenetic protein 7.	Bone morphogenetic protein 4 isoform X1.	0.810
BMP7	FGF10	A0A384ADG9	A0A384B7G3	Bone morphogenetic protein 7.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.509
BMP7	FGF8	A0A384ADG9	A0A384AJG6	Bone morphogenetic protein 7.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.510
BMP7	SHH	A0A384ADG9	A0A452CFB9	Bone morphogenetic protein 7.	LOW QUALITY PROTEIN: sonic hedgehog protein.	0.522
ETV4	FGF10	A0A452CFI9	A0A384B7G3	ETS translocation variant 4 isoform X1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.558
FGF10	BMP4	A0A384B7G3	A0A384B0Y0	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Bone morphogenetic protein 4 isoform X1.	0.768
FGF10	BMP7	A0A384B7G3	A0A384ADG9	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Bone morphogenetic protein 7.	0.509
FGF10	ETV4	A0A384B7G3	A0A452CFI9	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	ETS translocation variant 4 isoform X1.	0.558
FGF10	FGF8	A0A384B7G3	A0A384AJG6	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.569
FGF10	SHH	A0A384B7G3	A0A452CFB9	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	LOW QUALITY PROTEIN: sonic hedgehog protein.	0.783
FGF10	TBX4	A0A384B7G3	A0A384ASQ0	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	T-box transcription factor TBX4.	0.428
FGF8	BMP4	A0A384AJG6	A0A384B0Y0	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Bone morphogenetic protein 4 isoform X1.	0.657
FGF8	BMP7	A0A384AJG6	A0A384ADG9	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Bone morphogenetic protein 7.	0.510