Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDN63807.1 | SDO63434.1 | SAMN05216259_10525 | SAMN05216259_11189 | PELOTA RNA binding domain-containing protein. | Hypothetical protein. | 0.998 |
| SDN63807.1 | SDP15452.1 | SAMN05216259_10525 | SAMN05216259_11879 | PELOTA RNA binding domain-containing protein. | Hypothetical protein. | 0.999 |
| SDN63807.1 | gltX | SAMN05216259_10525 | SAMN05216259_1235 | PELOTA RNA binding domain-containing protein. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). | 0.999 |
| SDN63807.1 | rplA | SAMN05216259_10525 | SAMN05216259_109158 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.999 |
| SDN63807.1 | rplB | SAMN05216259_10525 | SAMN05216259_109210 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.999 |
| SDN63807.1 | rplJ | SAMN05216259_10525 | SAMN05216259_109161 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
| SDN63807.1 | rplK | SAMN05216259_10525 | SAMN05216259_109157 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
| SDN63807.1 | rplN | SAMN05216259_10525 | SAMN05216259_109217 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| SDN63807.1 | rplO | SAMN05216259_10525 | SAMN05216259_109226 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
| SDN63807.1 | rplP | SAMN05216259_10525 | SAMN05216259_109214 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
| SDN63807.1 | rplR | SAMN05216259_10525 | SAMN05216259_109223 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| SDN63807.1 | rplV | SAMN05216259_10525 | SAMN05216259_109212 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| SDN63807.1 | rplW | SAMN05216259_10525 | SAMN05216259_109209 | PELOTA RNA binding domain-containing protein. | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
| SDN63807.1 | rplX | SAMN05216259_10525 | SAMN05216259_109218 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| SDN63807.1 | rpmC | SAMN05216259_10525 | SAMN05216259_109215 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
| SDN63807.1 | rpmD | SAMN05216259_10525 | SAMN05216259_109225 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L30P. | 0.999 |
| SDN63807.1 | rpsD-2 | SAMN05216259_10525 | SAMN05216259_118107 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| SDN63807.1 | rpsE | SAMN05216259_10525 | SAMN05216259_109224 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| SDN63807.1 | rpsH | SAMN05216259_10525 | SAMN05216259_109221 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
| SDN63807.1 | rpsO | SAMN05216259_10525 | SAMN05216259_116120 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
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