STRINGSTRING
Avi_0293 Avi_0293 Avi_0295 Avi_0295 Avi_0296 Avi_0296 Avi_0297 Avi_0297 Avi_0430 Avi_0430 aau3 aau3 Avi_0923 Avi_0923 Avi_1302 Avi_1302 anmK anmK Avi_2074 Avi_2074 nifU nifU fdx fdx Avi_2429 Avi_2429 rhlE rhlE rhtB-7 rhtB-7 Avi_2433 Avi_2433 nifS nifS sufB sufB sufC sufC sufD sufD Avi_2440 Avi_2440 Avi_2441 Avi_2441 sufA sufA Avi_2678 Avi_2678 Avi_2901 Avi_2901 slt slt Avi_2906 Avi_2906 djlA djlA Avi_5475 Avi_5475
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Avi_0293Conserved Hypothetical Protein; Belongs to the UPF0312 family. (231 aa)
Avi_0295Cytochrome b561; Belongs to the UPF0312 family. (416 aa)
Avi_0296Conserved hypothetical protein. (116 aa)
Avi_0297Conserved hypothetical protein. (286 aa)
Avi_0430Conserved hypothetical protein. (186 aa)
aau3Conserved hypothetical protein. (156 aa)
Avi_0923Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (386 aa)
Avi_1302Conserved hypothetical protein. (139 aa)
anmKConserved hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. (529 aa)
Avi_2074Conserved hypothetical protein. (121 aa)
nifUNIFU-like protein. (147 aa)
fdxFerrodoxin. (106 aa)
Avi_2429mutT like protein; Belongs to the Nudix hydrolase family. (134 aa)
rhlEATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (516 aa)
rhtB-7RhtB family transporter. (207 aa)
Avi_2433Conserved hypothetical protein. (225 aa)
nifSCysteine desulfurase. (387 aa)
sufBABC transporter subunit. (489 aa)
sufCABC transporter nucleotide binding/ATPase protein. (251 aa)
sufDTransport system. (424 aa)
Avi_2440Aminotransferase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (416 aa)
Avi_2441Conserved hypothetical protein. (126 aa)
sufAFeS assembly scaffold SufA; Belongs to the HesB/IscA family. (128 aa)
Avi_2678Conserved hypothetical protein; Belongs to the HesB/IscA family. (110 aa)
Avi_2901Sarcosine oxidase. (397 aa)
sltSoluble lytic transglycosylase. (197 aa)
Avi_2906N-acetylmuramoyl-L-alanine amidase. (252 aa)
djlAMolecular chaperone DnaJ family. (245 aa)
Avi_5475Conserved hypothetical protein. (155 aa)
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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