STRINGSTRING
ocdch2 ocdch2 pip pip pip-2 pip-2 proC proC Arad_3911 Arad_3911 rocF rocF rocD rocD ocdch1-2 ocdch1-2 Arad_7871 Arad_7871 Arad_8082 Arad_8082 pipb2 pipb2 putA putA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ocdch2Ornithine cyclodeaminase protein. (349 aa)
pipProline iminopeptidase; Belongs to the peptidase S33 family. (327 aa)
pip-2Proline iminopeptidase; Belongs to the peptidase S33 family. (320 aa)
proCPyrroline-5-carboxylate reductase protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (279 aa)
Arad_3911Ornithine decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (377 aa)
rocFArginase; Belongs to the arginase family. (311 aa)
rocDOrnithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (400 aa)
ocdch1-2Ornithine cyclodeaminase protein. (323 aa)
Arad_7871Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (437 aa)
Arad_8082Pyrroline-5-carboxylate reductase protein. (256 aa)
pipb2Proline iminopeptidase protein; Belongs to the peptidase S33 family. (296 aa)
putAProline 1-pyrroline-5-carboxylate dehydrogenase/proline dehydrogenase protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1234 aa)
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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