STRINGSTRING
Arad_0201 Arad_0201 purU purU metK metK folDch folDch Arad_1180 Arad_1180 Arad_1182 Arad_1182 Arad_1324 Arad_1324 Arad_1325 Arad_1325 msrB msrB msrAb msrAb glyA glyA Arad_2506 Arad_2506 Arad_2507 Arad_2507 Arad_2510 Arad_2510 Arad_2512 Arad_2512 fghA fghA gcvT gcvT gcvH gcvH gcvP gcvP metH metH Arad_2814 Arad_2814 Arad_2816 Arad_2816 Arad_2818 Arad_2818 metH-2 metH-2 Arad_2823 Arad_2823 Arad_2824 Arad_2824 Arad_2827 Arad_2827 Arad_2828 Arad_2828 Arad_2829 Arad_2829 Arad_2831 Arad_2831 metF metF metH-3 metH-3 tdh tdh kbl kbl fhs fhs Arad_3336 Arad_3336 Arad_3491 Arad_3491 soxAe soxAe soxDe soxDe soxBe soxBe Arad_3541 Arad_3541 Arad_3542 Arad_3542 Arad_3543 Arad_3543 ung ung Arad_3547 Arad_3547 Arad_3548 Arad_3548 Arad_3549 Arad_3549 glpRb glpRb Arad_3838 Arad_3838 soxGch soxGch soxAch soxAch soxDch soxDch Arad_3881 Arad_3881 soxBch soxBch hemAch hemAch Arad_4299 Arad_4299 dhaL dhaL Arad_4301 Arad_4301 Arad_4728 Arad_4728 Arad_7067 Arad_7067 Arad_7728 Arad_7728 Arad_8050 Arad_8050 soxGe soxGe soxAe-2 soxAe-2 soxDe-2 soxDe-2 soxBe-2 soxBe-2 glxA glxA Arad_8360 Arad_8360 glxB glxB glxC glxC glxD glxD glnT glnT purU-2 purU-2 folDch-2 folDch-2 Arad_8372 Arad_8372 Arad_8373 Arad_8373 Arad_8374 Arad_8374 Arad_8376 Arad_8376 Arad_8377 Arad_8377 gcvT-2 gcvT-2 Arad_8623 Arad_8623 purU-3 purU-3 folDch-3 folDch-3 Arad_9001 Arad_9001 Arad_9002 Arad_9002 Arad_9004 Arad_9004
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Arad_0201Sugar kinase protein. (330 aa)
purUFormyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (294 aa)
metKS-adenosylmethionine synthetase; Belongs to the AdoMet synthase family. (417 aa)
folDchMethylenetetrahydrofolate dehydrogenase/cyclohydrolase protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (299 aa)
Arad_1180Ring hydroxylating dioxygenase alpha-subunit. (395 aa)
Arad_1182Ferredoxin oxidoreductase protein. (362 aa)
Arad_1324Conserved hypothetical protein. (260 aa)
Arad_1325Conserved hypothetical protein. (165 aa)
msrBPeptide methionine sulfoxide reductase protein. (149 aa)
msrAbPeptide methionine sulfoxide reductase protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (175 aa)
glyASerine hydroxymethyltransferase 1 protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (432 aa)
Arad_2506Transcription regulator protein. (140 aa)
Arad_2507Permease protein. (295 aa)
Arad_2510S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (375 aa)
Arad_2512Conserved hypothetical protein; Belongs to the UPF0178 family. (154 aa)
fghAS-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (265 aa)
gcvTGlycine cleavage system T protein. (356 aa)
gcvHGlycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (120 aa)
gcvPGlycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (954 aa)
metH5-methyltetrahydrofolate--homocysteine S-methyltransferase protein. (337 aa)
Arad_2814Conserved hypothetical protein. (246 aa)
Arad_2816Conserved hypothetical protein. (229 aa)
Arad_2818Trimethylamine methyltransferase protein; Belongs to the trimethylamine methyltransferase family. (526 aa)
metH-25-methyltetrahydrofolate--homocysteine S-methyltransferase protein. (233 aa)
Arad_2823Conserved hypothetical protein. (243 aa)
Arad_2824Conserved hypothetical protein. (100 aa)
Arad_2827Hypothetical protein. (192 aa)
Arad_2828Oxidoreductase protein; Belongs to the methylenetetrahydrofolate reductase family. (368 aa)
Arad_2829Methyltransferase protein. (321 aa)
Arad_2831Conserved hypothetical protein. (117 aa)
metF5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (304 aa)
metH-35-methyltetrahydrofolate--homocysteine S-methyltransferase protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1292 aa)
tdhL-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. (345 aa)
kbl2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. (395 aa)
fhsFormate-tetrahydrofolate ligase protein; Belongs to the formate--tetrahydrofolate ligase family. (559 aa)
Arad_3336Conserved hypothetical protein; Belongs to the trimethylamine methyltransferase family. (528 aa)
Arad_3491Glycine cleavage system T protein; Belongs to the GcvT family. (808 aa)
soxAeSarcosine oxidase alpha subunit protein. (985 aa)
soxDeSarcosine oxidase delta subunit protein. (91 aa)
soxBeSarcosine oxidase beta subunit protein. (417 aa)
Arad_3541Hypothetical protein. (230 aa)
Arad_3542Esterase/lipase/thioesterase protein. (203 aa)
Arad_3543Dioxygenase protein. (310 aa)
unguracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (233 aa)
Arad_3547Oxygenase (tetracycline 6-hydroxylase) protein. (513 aa)
Arad_3548Glycine cleavage system T protein; Belongs to the GcvT family. (815 aa)
Arad_3549Choline kinase protein. (301 aa)
glpRbGlycerol-3-phosphate transcriptional regulator protein. (267 aa)
Arad_3838Threonine aldolase protein; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. (348 aa)
soxGchSarcosine oxidase gamma subunit protein. (182 aa)
soxAchSarcosine oxidase alpha subunit protein. (997 aa)
soxDchSarcosine oxidase delta subunit protein. (121 aa)
Arad_3881Conserved hypothetical protein. (138 aa)
soxBchSarcosine oxidase beta subunit protein. (417 aa)
hemAch8-amino-7-oxononanoate synthase protein. (409 aa)
Arad_4299Isomerase protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (373 aa)
dhaLAldehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family. (499 aa)
Arad_4301Iron alcohol dehydrogenase protein. (381 aa)
Arad_4728Transcriptional regulator protein. (227 aa)
Arad_7067Glycine cleavage system T protein; Belongs to the GcvT family. (813 aa)
Arad_7728Sarcosine dehydrogenase protein; Belongs to the GcvT family. (853 aa)
Arad_8050Formaldehyde dehydrogenase, glutathione-independent. (396 aa)
soxGeSarcosine oxidase gamma subunit protein. (184 aa)
soxAe-2Sarcosine oxidase alpha subunit protein. (977 aa)
soxDe-2Sarcosine oxidase delta subunit protein. (92 aa)
soxBe-2Sarcosine oxidase beta subunit protein. (416 aa)
glxATranscriptional regulator protein. (319 aa)
Arad_8360Transcriptional regulator protein. (227 aa)
glxBAmidophosphoribosyl transferase protein. (302 aa)
glxCFormyl-methanofuran dehydrogenase domain 3 protein. (228 aa)
glxDGlutamate synthase large subunit 2 protein; Belongs to the glutamate synthase family. (442 aa)
glnTGlutamine synthetase III protein. (435 aa)
purU-2Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (294 aa)
folDch-2Methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (304 aa)
Arad_8372Aminomethyltransferase protein; Belongs to the GcvT family. (377 aa)
Arad_8373Conserved hypothetical protein. (201 aa)
Arad_8374Ferredoxin protein. (321 aa)
Arad_8376Conserved hypothetical protein. (346 aa)
Arad_8377Monooxygenase protein. (445 aa)
gcvT-2Glycine cleavage system T protein; Belongs to the GcvT family. (789 aa)
Arad_8623Dehydrogenase protein. (402 aa)
purU-3Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (294 aa)
folDch-3Methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (304 aa)
Arad_9001Transcriptional regulator protein. (209 aa)
Arad_9002Flavoprotein oxidoreductase. (678 aa)
Arad_9004Transcriptional regulator protein. (200 aa)
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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