STRINGSTRING
Arad_7721 Arad_7721 Arad_0410 Arad_0410 Arad_0458 Arad_0458 Arad_0554 Arad_0554 Arad_1375 Arad_1375 Arad_1580 Arad_1580 pip pip pip-2 pip-2 Arad_2564 Arad_2564 rutF1 rutF1 Arad_3538 Arad_3538 ntaA ntaA Arad_3605 Arad_3605 Arad_4087 Arad_4087 rutF2 rutF2 rutD rutD rutC rutC rutB rutB rutA rutA Arad_7162 Arad_7162 Arad_7230 Arad_7230 Arad_7251 Arad_7251 Arad_7285 Arad_7285 Arad_7305 Arad_7305 Arad_7315 Arad_7315 Arad_7544 Arad_7544 ssuD-2 ssuD-2 Arad_7684 Arad_7684 ntaA-2 ntaA-2 Arad_7704 Arad_7704 Arad_7723 Arad_7723 Arad_8157 Arad_8157 pipb2 pipb2 pipb1 pipb1 Arad_8691 Arad_8691 Arad_9062 Arad_9062 Arad_9072 Arad_9072 Arad_9119 Arad_9119 Arad_9172 Arad_9172 Arad_9300 Arad_9300 Arad_9353 Arad_9353 Arad_9432 Arad_9432 pcaD pcaD ssuD-4 ssuD-4 Arad_9727 Arad_9727 Arad_9833 Arad_9833 Arad_9854 Arad_9854 Arad_9882 Arad_9882 Arad_9883 Arad_9883
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Arad_7721Nitrilotriacetate monooxygenase protein component A. (428 aa)
Arad_0410Translation initiation inhibitor protein. (129 aa)
Arad_0458Isochorismatase protein. (190 aa)
Arad_0554Isochorismatase protein. (185 aa)
Arad_1375Translation initiation inhibitor protein. (127 aa)
Arad_1580Hydrolase protein. (297 aa)
pipProline iminopeptidase; Belongs to the peptidase S33 family. (327 aa)
pip-2Proline iminopeptidase; Belongs to the peptidase S33 family. (320 aa)
Arad_25644-hydroxyphenylacetate 3-monooxygenase small chain protein. (169 aa)
rutF14-hydroxyphenylacetate 3-monooxygenase small chain protein; Catalyzes the reduction of FMN to FMNH2 which is used to reduce pyrimidine by RutA via the Rut pathway; Belongs to the non-flavoprotein flavin reductase family. RutF subfamily. (206 aa)
Arad_3538Translation initiation inhibitor protein. (148 aa)
ntaANitrilotriacetate monooxygenase protein. (448 aa)
Arad_3605Monooxygenase protein. (456 aa)
Arad_4087Isochorismatase hydrolase protein. (228 aa)
rutF24-hydroxyphenylacetate 3-monooxygenase small chain protein; Catalyzes the reduction of FMN to FMNH2 which is used to reduce pyrimidine by RutA via the Rut pathway; Belongs to the non-flavoprotein flavin reductase family. RutF subfamily. (173 aa)
rutDHydrolase protein; May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation. Belongs to the AB hydrolase superfamily. Hydrolase RutD family. (262 aa)
rutCConserved hypothetical protein; May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation. (129 aa)
rutBIsochorismatase hydrolase protein; In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2; Belongs to the isochorismatase family. RutB subfamily. (246 aa)
rutAMonooxygenase protein; Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate. (363 aa)
Arad_71624-hydroxyphenylacetate-3-monooxygenase protein. (177 aa)
Arad_7230Translation initiation inhibitor protein. (136 aa)
Arad_7251Isochorismatase hydrolase. (195 aa)
Arad_7285Isochorismatase hydrolase protein. (196 aa)
Arad_7305Translation initiation inhibitor-related protein. (141 aa)
Arad_73154-hydroxyphenylacetate-3-monooxygenase protein. (171 aa)
Arad_7544Conserved hypothetical protein. (198 aa)
ssuD-2Alkanesulfonate monooxygenase protein. (366 aa)
Arad_7684Monooxygenase protein. (392 aa)
ntaA-2Nitrilotriacetate monooxygenase protein. (443 aa)
Arad_7704Monooxygenase protein. (451 aa)
Arad_7723Monooxygenase protein. (445 aa)
Arad_8157Monooxygenase protein. (474 aa)
pipb2Proline iminopeptidase protein; Belongs to the peptidase S33 family. (296 aa)
pipb1Proline iminopeptidase protein; Belongs to the peptidase S33 family. (323 aa)
Arad_8691Monooxygenase protein. (452 aa)
Arad_9062Monooxygenase protein. (465 aa)
Arad_9072Nitrilotriacetate monooxygenase protein component A. (449 aa)
Arad_9119Monooxygenase protein. (446 aa)
Arad_9172Translation initiation inhibitor protein. (132 aa)
Arad_9300Monooxygenase protein. (420 aa)
Arad_9353Nitrilotriacetate monooxygenase component B protein. (174 aa)
Arad_9432Translation initiation inhibitor protein. (129 aa)
pcaD3-oxoadipate enol-lactonase. (270 aa)
ssuD-4Alkanesulfonate monooxygenase protein. (369 aa)
Arad_9727Hydrolase protein. (281 aa)
Arad_9833Conserved hypothetical protein. (137 aa)
Arad_9854Isochorismatase protein. (220 aa)
Arad_9882Isochorismatase protein. (211 aa)
Arad_9883Isochorismatase protein. (228 aa)
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.