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ocdch1 ocdch1 gabDch gabDch gabDch-2 gabDch-2 gabT gabT glnII glnII glnA1 glnA1 argG2 argG2 Arad_1528 Arad_1528 purF purF pyrB pyrB ald ald glmS glmS glnA2 glnA2 purB purB purQ purQ glsA glsA Arad_2875 Arad_2875 glnA3 glnA3 carA carA carB carB aatAch aatAch purA purA gltD-2 gltD-2 gltB gltB argH argH argG argG Arad_4497 Arad_4497 glmS2 glmS2 Arad_4924 Arad_4924 aatAc aatAc Arad_7566 Arad_7566 asnB asnB aatAch-2 aatAch-2 ocdch2-2 ocdch2-2 Arad_8446 Arad_8446 aspA aspA Arad_8852 Arad_8852 nadB nadB gabDf1 gabDf1 bioA-4 bioA-4 putA putA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ocdch1Ornithine cyclodeaminase protein. (316 aa)
gabDchSuccinate-semialdehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family. (476 aa)
gabDch-2Succinate-semialdehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family. (493 aa)
gabT4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (423 aa)
glnIIGlutamine synthetase II protein. (346 aa)
glnA1Glutamine synthetase protein. (478 aa)
argG2Argininosuccinate synthase protein; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (407 aa)
Arad_1528Glutamine synthetase protein. (446 aa)
purFAmidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (494 aa)
pyrBAspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (318 aa)
aldAlanine dehydrogenase; Belongs to the AlaDH/PNT family. (372 aa)
glmSGlucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (608 aa)
glnA2Glutamine synthetase protein. (469 aa)
purBAdenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (433 aa)
purQPhosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...] (223 aa)
glsAGlutaminase protein; Belongs to the glutaminase family. (309 aa)
Arad_2875Aspartate racemase protein. (239 aa)
glnA3Glutamine synthetase protein. (456 aa)
carACarbamoyl-phosphate synthase small chain (glutamine-hydrolysing) protein; Belongs to the CarA family. (402 aa)
carBCarbamoyl-phosphate synthase large chain (ammonia chain) protein; Belongs to the CarB family. (1161 aa)
aatAchAspartate aminotransferase protein. (400 aa)
purAAdenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (431 aa)
gltD-2Glutamate synthase small subunit protein. (484 aa)
gltBGlutamate synthase large subunit protein. (1567 aa)
argHArgininosuccinate lyase protein. (466 aa)
argGArgininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (407 aa)
Arad_4497Adenosylmethionine--8-amino-7-oxononanoate aminotransferase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (481 aa)
glmS2Glucosamine--fructose-6-phosphate aminotransferase protein. (343 aa)
Arad_4924NAD-specific glutamate dehydrogenase protein. (1596 aa)
aatAcAspartate aminotransferase protein. (400 aa)
Arad_7566Aldehyde dehydrogenase protein. (463 aa)
asnBAsparagine synthase (glutamine-hydrolyzing). (653 aa)
aatAch-2Aspartate aminotransferase protein. (402 aa)
ocdch2-2Ornithine cyclodeaminase protein. (334 aa)
Arad_8446Ornithine cyclodeaminase protein. (313 aa)
aspAAspartate ammonia-lyase. (479 aa)
Arad_8852L-asparaginase. (315 aa)
nadBL-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (513 aa)
gabDf1Succinate semialdehyde dehydrogenase protein; Belongs to the aldehyde dehydrogenase family. (484 aa)
bioA-4Adenosylmethionine-8-amino-7-oxononanoate aminotransferase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (450 aa)
putAProline 1-pyrroline-5-carboxylate dehydrogenase/proline dehydrogenase protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1234 aa)
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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