STRINGSTRING
A4VCU1_TETTS A4VCU1_TETTS LSM8 LSM8 I7LTE1_TETTS I7LTE1_TETTS I7LZW0_TETTS I7LZW0_TETTS I7M0X6_TETTS I7M0X6_TETTS I7M1Z3_TETTS I7M1Z3_TETTS I7MFR0_TETTS I7MFR0_TETTS I7MJN3_TETTS I7MJN3_TETTS I7MM90_TETTS I7MM90_TETTS Q22A33_TETTS Q22A33_TETTS Q22CK3_TETTS Q22CK3_TETTS Q22E94_TETTS Q22E94_TETTS Q22M17_TETTS Q22M17_TETTS LSM4 LSM4 Q22R82_TETTS Q22R82_TETTS Q22RK9_TETTS Q22RK9_TETTS Q22Z37_TETTS Q22Z37_TETTS Q232H6_TETTS Q232H6_TETTS Q23DA2_TETTS Q23DA2_TETTS Q23FM4_TETTS Q23FM4_TETTS Q23FT4_TETTS Q23FT4_TETTS Q23S00_TETTS Q23S00_TETTS Q23W03_TETTS Q23W03_TETTS Q23YD9_TETTS Q23YD9_TETTS Q240I5_TETTS Q240I5_TETTS Q24H84_TETTS Q24H84_TETTS W7X1H0_TETTS W7X1H0_TETTS W7X3U5_TETTS W7X3U5_TETTS LSM5 LSM5 W7XEA1_TETTS W7XEA1_TETTS W7XFS7_TETTS W7XFS7_TETTS W7XGF0_TETTS W7XGF0_TETTS W7XJD3_TETTS W7XJD3_TETTS W7XKA4_TETTS W7XKA4_TETTS W7XLM8_TETTS W7XLM8_TETTS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A4VCU1_TETTSSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (107 aa)
I7LTE1_TETTSSplicing factor 3B subunit 3. (1197 aa)
I7LZW0_TETTSSplicing factor 3B subunit 1. (1224 aa)
I7M0X6_TETTSDEAD/DEAH-box helicase. (837 aa)
I7M1Z3_TETTSSplicing factor 3A subunit 2. (227 aa)
I7MFR0_TETTSSm protein B domain protein. (159 aa)
I7MJN3_TETTSU1 small nuclear ribonucleoprotein A. (247 aa)
I7MM90_TETTSSmall nuclear ribonucleoprotein helicase. (2216 aa)
Q22A33_TETTSSmall nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (111 aa)
Q22CK3_TETTSU1 small nuclear ribonucleoprotein A. (231 aa)
Q22E94_TETTSU6 snRNA associated-like-Smprotein. (103 aa)
Q22M17_TETTSPre-mRNA-splicing factor ini1. (110 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (135 aa)
Q22R82_TETTSSplicing factor protein. (325 aa)
Q22RK9_TETTSPSP family protein. (523 aa)
Q22Z37_TETTSSnoRNA-binding domain protein, putative. (625 aa)
Q232H6_TETTSU1 small nuclear ribonucleoprotein 70 kDa protein. (536 aa)
Q23DA2_TETTSUncharacterized protein. (1256 aa)
Q23FM4_TETTSElongation factor G domain protein. (972 aa)
Q23FT4_TETTSPre-mRNA-processing-splicing factor 8. (2352 aa)
Q23S00_TETTSSART-1 family protein. (598 aa)
Q23W03_TETTSComponent of the U4/U6.U5 snRNP/mitosis protein DIM1. (142 aa)
Q23YD9_TETTSRNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor. (118 aa)
Q240I5_TETTSDEAD/DEAH-box helicase; Belongs to the DEAD box helicase family. (749 aa)
Q24H84_TETTSSmall nuclear ribonucleoprotein Sm D2. (103 aa)
W7X1H0_TETTSU6 snRNA associated-like-Smprotein. (98 aa)
W7X3U5_TETTSU6 snRNA associated-like-Smprotein. (90 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (84 aa)
W7XEA1_TETTSSmall nuclear ribonucleoprotein Sm D3. (117 aa)
W7XFS7_TETTSSmall nuclear ribonucleoprotein. (79 aa)
W7XGF0_TETTSSmall nuclear ribonucleoprotein G. (86 aa)
W7XJD3_TETTSU6 snRNA-associated-like-Smprotein LSm6. (81 aa)
W7XKA4_TETTSSplicing factor subunit; Belongs to the SF3B5 family. (89 aa)
W7XLM8_TETTSU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (243 aa)
Your Current Organism:
Tetrahymena thermophila
NCBI taxonomy Id: 312017
Other names: T. thermophila SB210, Tetrahymena thermophila SB210
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