(11 nodes) RNA polymerase II, core complex, and Cdc73/Paf1 complex network (Tetrahymena thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I7LT54_TETTS	Transcription factor S-II. (321 aa)
	I7M611_TETTS	RNA pol II accessory factor, Cdc73 family protein. (395 aa)
	I7M8E8_TETTS	Metallopeptidase family M24 containing protein. (1008 aa)
	I7M9Q1_TETTS	Plus-3 domain protein. (481 aa)
	I7MA57_TETTS	RNA polymerase rpb8. (130 aa)
	Q229U1_TETTS	Tetratricopeptide repeat protein. (1137 aa)
	Q22N16_TETTS	Transcription elongation factor spt5. (778 aa)
	Q23QF5_TETTS	High mobility group (HMG) box protein. (249 aa)
	Q24FV0_TETTS	RNA polymerase Rpb5, carboxy-terminal domain protein. (275 aa)
	W7WXG3_TETTS	DNA-directed RNA polymerase II 13.3 kDa proteinRPB11. (183 aa)
	W7XDW4_TETTS	F-box protein, putative. (298 aa)

Your Current Organism:

Tetrahymena thermophila

NCBI taxonomy Id: 312017
Other names: T. thermophila SB210, Tetrahymena thermophila SB210

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I7LT54_TETTS	I7M611_TETTS	I7LT54	I7M611	Transcription factor S-II.	RNA pol II accessory factor, Cdc73 family protein.	0.940
I7LT54_TETTS	I7M8E8_TETTS	I7LT54	I7M8E8	Transcription factor S-II.	Metallopeptidase family M24 containing protein.	0.942
I7LT54_TETTS	I7M9Q1_TETTS	I7LT54	I7M9Q1	Transcription factor S-II.	Plus-3 domain protein.	0.899
I7LT54_TETTS	I7MA57_TETTS	I7LT54	I7MA57	Transcription factor S-II.	RNA polymerase rpb8.	0.972
I7LT54_TETTS	Q229U1_TETTS	I7LT54	Q229U1	Transcription factor S-II.	Tetratricopeptide repeat protein.	0.679
I7LT54_TETTS	Q22N16_TETTS	I7LT54	Q22N16	Transcription factor S-II.	Transcription elongation factor spt5.	0.996
I7LT54_TETTS	Q23QF5_TETTS	I7LT54	Q23QF5	Transcription factor S-II.	High mobility group (HMG) box protein.	0.862
I7LT54_TETTS	Q24FV0_TETTS	I7LT54	Q24FV0	Transcription factor S-II.	RNA polymerase Rpb5, carboxy-terminal domain protein.	0.999
I7LT54_TETTS	W7WXG3_TETTS	I7LT54	W7WXG3	Transcription factor S-II.	DNA-directed RNA polymerase II 13.3 kDa proteinRPB11.	0.998
I7LT54_TETTS	W7XDW4_TETTS	I7LT54	W7XDW4	Transcription factor S-II.	F-box protein, putative.	0.999
I7M611_TETTS	I7LT54_TETTS	I7M611	I7LT54	RNA pol II accessory factor, Cdc73 family protein.	Transcription factor S-II.	0.940
I7M611_TETTS	I7M8E8_TETTS	I7M611	I7M8E8	RNA pol II accessory factor, Cdc73 family protein.	Metallopeptidase family M24 containing protein.	0.999
I7M611_TETTS	I7M9Q1_TETTS	I7M611	I7M9Q1	RNA pol II accessory factor, Cdc73 family protein.	Plus-3 domain protein.	0.999
I7M611_TETTS	I7MA57_TETTS	I7M611	I7MA57	RNA pol II accessory factor, Cdc73 family protein.	RNA polymerase rpb8.	0.911
I7M611_TETTS	Q229U1_TETTS	I7M611	Q229U1	RNA pol II accessory factor, Cdc73 family protein.	Tetratricopeptide repeat protein.	0.989
I7M611_TETTS	Q22N16_TETTS	I7M611	Q22N16	RNA pol II accessory factor, Cdc73 family protein.	Transcription elongation factor spt5.	0.991
I7M611_TETTS	Q23QF5_TETTS	I7M611	Q23QF5	RNA pol II accessory factor, Cdc73 family protein.	High mobility group (HMG) box protein.	0.980
I7M611_TETTS	Q24FV0_TETTS	I7M611	Q24FV0	RNA pol II accessory factor, Cdc73 family protein.	RNA polymerase Rpb5, carboxy-terminal domain protein.	0.985
I7M611_TETTS	W7WXG3_TETTS	I7M611	W7WXG3	RNA pol II accessory factor, Cdc73 family protein.	DNA-directed RNA polymerase II 13.3 kDa proteinRPB11.	0.980
I7M611_TETTS	W7XDW4_TETTS	I7M611	W7XDW4	RNA pol II accessory factor, Cdc73 family protein.	F-box protein, putative.	0.982