(12 nodes) Transcription preinitiation complex assembly network (Tetrahymena thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I7MCY4_TETTS	A49-like RNA polymerase I associated factor. (437 aa)
	I7MGV8_TETTS	Transcription factor TFIIB repeat protein. (582 aa)
	I7MKI3_TETTS	Histone-like transcription factor and archaeal histone protein. (178 aa)
	Q22GJ3_TETTS	TAF7 RNA polymerase II, TATA box-binding protein. (238 aa)
	Q231M7_TETTS	General transcription factor IIB. (869 aa)
	Q23CM9_TETTS	Myb-like DNA-binding domain protein. (184 aa)
	Q23FC6_TETTS	Myb-like DNA-binding domain protein. (351 aa)
	Q23K01_TETTS	Myb-like DNA-binding domain protein. (640 aa)
	Q23KL3_TETTS	Uncharacterized protein. (1973 aa)
	Q23Q10_TETTS	Myb-like DNA-binding domain protein. (361 aa)
	Q23QE8_TETTS	Myb-like DNA-binding domain protein. (397 aa)
	Q23ZC7_TETTS	TATA box-binding protein associated factor. (522 aa)

Your Current Organism:

Tetrahymena thermophila

NCBI taxonomy Id: 312017
Other names: T. thermophila SB210, Tetrahymena thermophila SB210

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I7MCY4_TETTS	Q22GJ3_TETTS	I7MCY4	Q22GJ3	A49-like RNA polymerase I associated factor.	TAF7 RNA polymerase II, TATA box-binding protein.	0.410
I7MGV8_TETTS	Q231M7_TETTS	I7MGV8	Q231M7	Transcription factor TFIIB repeat protein.	General transcription factor IIB.	0.615
I7MGV8_TETTS	Q23CM9_TETTS	I7MGV8	Q23CM9	Transcription factor TFIIB repeat protein.	Myb-like DNA-binding domain protein.	0.931
I7MGV8_TETTS	Q23FC6_TETTS	I7MGV8	Q23FC6	Transcription factor TFIIB repeat protein.	Myb-like DNA-binding domain protein.	0.931
I7MGV8_TETTS	Q23K01_TETTS	I7MGV8	Q23K01	Transcription factor TFIIB repeat protein.	Myb-like DNA-binding domain protein.	0.931
I7MGV8_TETTS	Q23Q10_TETTS	I7MGV8	Q23Q10	Transcription factor TFIIB repeat protein.	Myb-like DNA-binding domain protein.	0.931
I7MGV8_TETTS	Q23QE8_TETTS	I7MGV8	Q23QE8	Transcription factor TFIIB repeat protein.	Myb-like DNA-binding domain protein.	0.931
I7MKI3_TETTS	Q231M7_TETTS	I7MKI3	Q231M7	Histone-like transcription factor and archaeal histone protein.	General transcription factor IIB.	0.576
Q22GJ3_TETTS	I7MCY4_TETTS	Q22GJ3	I7MCY4	TAF7 RNA polymerase II, TATA box-binding protein.	A49-like RNA polymerase I associated factor.	0.410
Q22GJ3_TETTS	Q231M7_TETTS	Q22GJ3	Q231M7	TAF7 RNA polymerase II, TATA box-binding protein.	General transcription factor IIB.	0.957
Q22GJ3_TETTS	Q23KL3_TETTS	Q22GJ3	Q23KL3	TAF7 RNA polymerase II, TATA box-binding protein.	Uncharacterized protein.	0.999
Q22GJ3_TETTS	Q23ZC7_TETTS	Q22GJ3	Q23ZC7	TAF7 RNA polymerase II, TATA box-binding protein.	TATA box-binding protein associated factor.	0.999
Q231M7_TETTS	I7MGV8_TETTS	Q231M7	I7MGV8	General transcription factor IIB.	Transcription factor TFIIB repeat protein.	0.615
Q231M7_TETTS	I7MKI3_TETTS	Q231M7	I7MKI3	General transcription factor IIB.	Histone-like transcription factor and archaeal histone protein.	0.576
Q231M7_TETTS	Q22GJ3_TETTS	Q231M7	Q22GJ3	General transcription factor IIB.	TAF7 RNA polymerase II, TATA box-binding protein.	0.957
Q231M7_TETTS	Q23KL3_TETTS	Q231M7	Q23KL3	General transcription factor IIB.	Uncharacterized protein.	0.997
Q231M7_TETTS	Q23ZC7_TETTS	Q231M7	Q23ZC7	General transcription factor IIB.	TATA box-binding protein associated factor.	0.953
Q23CM9_TETTS	I7MGV8_TETTS	Q23CM9	I7MGV8	Myb-like DNA-binding domain protein.	Transcription factor TFIIB repeat protein.	0.931
Q23FC6_TETTS	I7MGV8_TETTS	Q23FC6	I7MGV8	Myb-like DNA-binding domain protein.	Transcription factor TFIIB repeat protein.	0.931
Q23K01_TETTS	I7MGV8_TETTS	Q23K01	I7MGV8	Myb-like DNA-binding domain protein.	Transcription factor TFIIB repeat protein.	0.931