(7 nodes) RNA polymerase Rpb2, OB-fold network (Tetrahymena thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Q23G41_TETTS	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1226 aa)
	Q236N3_TETTS	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1141 aa)
	Q233Q8_TETTS	DNA-directed RNA polymerase II. (425 aa)
	Q22C62_TETTS	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1159 aa)
	Q22C56_TETTS	DNA-directed RNA polymerase, beta subunit. (595 aa)
	Q24BR2_TETTS	DNA-directed RNA polymerase II. (505 aa)
	Q23U98_TETTS	DNA-directed RNA polymerase, beta subunit. (312 aa)

Your Current Organism:

Tetrahymena thermophila

NCBI taxonomy Id: 312017
Other names: T. thermophila SB210, Tetrahymena thermophila SB210

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Q22C56_TETTS	Q23G41_TETTS	Q22C56	Q23G41	DNA-directed RNA polymerase, beta subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.916
Q22C56_TETTS	Q24BR2_TETTS	Q22C56	Q24BR2	DNA-directed RNA polymerase, beta subunit.	DNA-directed RNA polymerase II.	0.900
Q22C62_TETTS	Q236N3_TETTS	Q22C62	Q236N3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.804
Q236N3_TETTS	Q22C62_TETTS	Q236N3	Q22C62	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.804
Q23G41_TETTS	Q22C56_TETTS	Q23G41	Q22C56	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit.	0.916
Q23G41_TETTS	Q24BR2_TETTS	Q23G41	Q24BR2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II.	0.915
Q24BR2_TETTS	Q22C56_TETTS	Q24BR2	Q22C56	DNA-directed RNA polymerase II.	DNA-directed RNA polymerase, beta subunit.	0.900
Q24BR2_TETTS	Q23G41_TETTS	Q24BR2	Q23G41	DNA-directed RNA polymerase II.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.915