STRINGSTRING
VF_A0036 VF_A0036 VF_A0087 VF_A0087 fhuC fhuC rscS rscS VF_A0274 VF_A0274 BinK BinK VF_A0834 VF_A0834 VF_A0783 VF_A0783 sypA sypA fecE fecE trxA trxA yjcE yjcE VF_0533 VF_0533 aox aox VF_0805 VF_0805 tolA tolA VF_1052 VF_1052 VF_1418 VF_1418 VF_1432 VF_1432 VF_1598 VF_1598 yjgM yjgM VF_1680 VF_1680 rssA rssA VF_2264 VF_2264 VF_2302 VF_2302 gfa gfa VF_A0030 VF_A0030
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VF_A0036Hypothetical protein. (211 aa)
VF_A0087Outer membrane protein RomA. (355 aa)
fhuCIron-hydroxamate transporter subunit. (271 aa)
rscSHybrid sensor kinase RscS; Activator of syp locus genes. (927 aa)
VF_A0274acyl-CoA desaturase. (375 aa)
BinKSensor histidine kinase, GacS/BarA family. (864 aa)
VF_A0834NirV precursor. (624 aa)
VF_A0783Ferrichrome transport ATP-binding protein FhuC. (255 aa)
sypAPutative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. (105 aa)
fecEVitamin B12 transport ATP-binding protein BtuD. (259 aa)
trxAThioredoxin; Belongs to the thioredoxin family. (108 aa)
yjcEPredicted cation/proton antiporter. (425 aa)
VF_0533long-chain-fatty-acid--CoA ligase. (558 aa)
aoxAlternative oxidase 1. (211 aa)
VF_0805Glutathione-regulated potassium-efflux system protein KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (534 aa)
tolAMembrane anchored protein in TolA-TolQ-TolR complex. (346 aa)
VF_1052Transporter, divalent anion:sodium symporter family. (486 aa)
VF_1418Hypothetical protein. (264 aa)
VF_1432Predicted DNA-binding protein; Belongs to the UPF0251 family. (94 aa)
VF_1598Exochitinase. (845 aa)
yjgMPredicted acetyltransferase. (166 aa)
VF_1680Transporter, drug/metabolite exporter family. (290 aa)
rssAPutative serine protease. (295 aa)
VF_2264long-chain-fatty-acid--CoA ligase. (612 aa)
VF_2302Hypothetical protein. (82 aa)
gfaGlutathione-dependent formaldehyde-activating enzyme; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family. (187 aa)
VF_A0030Transporter, drug/metabolite exporter family. (285 aa)
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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