STRINGSTRING
sypF sypF luxU luxU torS torS cheA cheA gacS gacS arcB arcB VF_A0217 VF_A0217 rscS rscS VF_A1013 VF_A1013
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sypFTwo-component hybrid sensor histidine kinase; Syp polysaccharide locus. (766 aa)
luxUAutoinducer phosphorelay protein LuxU. (118 aa)
torSHybrid sensory histidine kinase in two-component regulatory system with TorR. (972 aa)
cheAChemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY. (735 aa)
gacSHybrid sensory histidine kinase, in two-component regulatory system with GacA. (931 aa)
arcBHybrid sensory histidine kinase in two-component regulatory system with ArcA. (788 aa)
VF_A0217Hypothetical protein. (106 aa)
rscSHybrid sensor kinase RscS; Activator of syp locus genes. (927 aa)
VF_A1013Hypothetical protein. (109 aa)
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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