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vpsT vpsT ntrC ntrC VF_0344 VF_0344 wcaJ wcaJ mshA mshA rpoN rpoN vpsR vpsR luxS luxS luxP luxP luxQ luxQ luxO luxO luxU luxU mifA mifA yeeZ yeeZ flrC flrC flaA flaA flgE flgE flgD flgD rpoS rpoS litR litR pilD pilD crp crp motX motX uhpA uhpA rscS rscS VF_A0881 VF_A0881 VF_A0885 VF_A0885 luxR luxR sypA sypA sypE sypE sypF sypF sypG sypG sypR sypR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vpsTDNA-binding transcriptional activator VpsT (CsgD-like). (214 aa)
ntrCDNA-binding transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (467 aa)
VF_0344Glycosyltransferase. (377 aa)
wcaJPredicted UDP-glucose lipid carrier transferase. (470 aa)
mshAMSHA pilin protein MshA. (154 aa)
rpoNRNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (489 aa)
vpsRSigma-54 dependent transcriptional regulator VpsR. (445 aa)
luxSS-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (172 aa)
luxPPeriplasmic AI-2 binding protein LuxP. (372 aa)
luxQMembrane-bound sensor histidine kinase LuxQ. (744 aa)
luxOAutoinducer repressor protein LuxO. (476 aa)
luxUAutoinducer phosphorelay protein LuxU. (118 aa)
mifADiguanylate cyclase (GGDEF), inhibitor of flagellar motility. (631 aa)
yeeZPredicted epimerase, with NAD(P)-binding Rossmann-fold domain. (260 aa)
flrCTwo-component response regulator FlrC. (477 aa)
flaAFlagellin FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (379 aa)
flgEFlagellar hook protein FlgE. (432 aa)
flgDFlagellar hook capping protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein. (236 aa)
rpoSRNA polymerase, sigma-S (sigma-38) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (321 aa)
litRQuorum sensing transcriptional regulator LitR (HapR). (201 aa)
pilDType 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (295 aa)
crpDNA-binding transcriptional regulator CRP. (210 aa)
motXFlagellar motor protein MotX. (210 aa)
uhpADNA-binding response regulator in two-component regulatory system wtih UhpB. (202 aa)
rscSHybrid sensor kinase RscS; Activator of syp locus genes. (927 aa)
VF_A0881Cellulose synthase operon C protein. (1244 aa)
VF_A0885Hypothetical protein. (256 aa)
luxRAutoinducer-binding transcriptional activator protein LuxR; Transcriptional activator of the bioluminescence operon. Binds to the OHHL autoinducer. (250 aa)
sypAPutative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. (105 aa)
sypETwo-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. (505 aa)
sypFTwo-component hybrid sensor histidine kinase; Syp polysaccharide locus. (766 aa)
sypGSigma-54 dependent transcriptional regulator; Syp polysaccharide locus. (500 aa)
sypRSugar transferase; Syp polysaccharide locus. (214 aa)
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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