Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VF_1401 | arcB | VF_1401 | VF_2122 | Sigma-54 dependent response regulator. | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | 0.699 |
| VF_1401 | rpoN | VF_1401 | VF_0387 | Sigma-54 dependent response regulator. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.885 |
| VF_1401 | rscS | VF_1401 | VF_A0237 | Sigma-54 dependent response regulator. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.766 |
| VF_1401 | sypA | VF_1401 | VF_A1020 | Sigma-54 dependent response regulator. | Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. | 0.507 |
| VF_1401 | sypD | VF_1401 | VF_A1023 | Sigma-54 dependent response regulator. | ATPase involved in chromosome partitioning; Syp polysaccharide locus. | 0.546 |
| VF_1401 | sypF | VF_1401 | VF_A1025 | Sigma-54 dependent response regulator. | Two-component hybrid sensor histidine kinase; Syp polysaccharide locus. | 0.577 |
| VF_1401 | sypI | VF_1401 | VF_A1028 | Sigma-54 dependent response regulator. | Glycosyl transferases group 1; Syp polysaccharide locus. | 0.612 |
| VF_1401 | sypM | VF_1401 | VF_A1032 | Sigma-54 dependent response regulator. | Acetyltransferase (isoleucine patch superfamily); Syp polysaccharide locus. | 0.639 |
| arcB | VF_1401 | VF_2122 | VF_1401 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Sigma-54 dependent response regulator. | 0.699 |
| arcB | flrC | VF_2122 | VF_1854 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Two-component response regulator FlrC. | 0.561 |
| arcB | hpt | VF_2122 | VF_2176 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.688 |
| arcB | rpoN | VF_2122 | VF_0387 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.443 |
| arcB | rscS | VF_2122 | VF_A0237 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.994 |
| arcB | sypA | VF_2122 | VF_A1020 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. | 0.775 |
| arcB | sypE | VF_2122 | VF_A1024 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.939 |
| arcB | sypF | VF_2122 | VF_A1025 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Two-component hybrid sensor histidine kinase; Syp polysaccharide locus. | 0.993 |
| arcB | sypG | VF_2122 | VF_A1026 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Sigma-54 dependent transcriptional regulator; Syp polysaccharide locus. | 0.561 |
| arcB | vpsR | VF_2122 | VF_0454 | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | Sigma-54 dependent transcriptional regulator VpsR. | 0.561 |
| flrC | arcB | VF_1854 | VF_2122 | Two-component response regulator FlrC. | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | 0.561 |
| flrC | rpoN | VF_1854 | VF_0387 | Two-component response regulator FlrC. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.879 |
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