Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VF_1432 | mutL | VF_1432 | VF_2325 | Predicted DNA-binding protein; Belongs to the UPF0251 family. | Methyl-directed mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.440 |
| VF_1432 | rscS | VF_1432 | VF_A0237 | Predicted DNA-binding protein; Belongs to the UPF0251 family. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.457 |
| VF_1432 | sypA | VF_1432 | VF_A1020 | Predicted DNA-binding protein; Belongs to the UPF0251 family. | Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. | 0.495 |
| VF_1432 | sypF | VF_1432 | VF_A1025 | Predicted DNA-binding protein; Belongs to the UPF0251 family. | Two-component hybrid sensor histidine kinase; Syp polysaccharide locus. | 0.499 |
| VF_1432 | sypG | VF_1432 | VF_A1026 | Predicted DNA-binding protein; Belongs to the UPF0251 family. | Sigma-54 dependent transcriptional regulator; Syp polysaccharide locus. | 0.459 |
| VF_1432 | vpsR | VF_1432 | VF_0454 | Predicted DNA-binding protein; Belongs to the UPF0251 family. | Sigma-54 dependent transcriptional regulator VpsR. | 0.499 |
| mutL | VF_1432 | VF_2325 | VF_1432 | Methyl-directed mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Predicted DNA-binding protein; Belongs to the UPF0251 family. | 0.440 |
| mutL | rscS | VF_2325 | VF_A0237 | Methyl-directed mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.632 |
| mutL | sypA | VF_2325 | VF_A1020 | Methyl-directed mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. | 0.441 |
| mutL | sypE | VF_2325 | VF_A1024 | Methyl-directed mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.645 |
| rscS | VF_1432 | VF_A0237 | VF_1432 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Predicted DNA-binding protein; Belongs to the UPF0251 family. | 0.457 |
| rscS | mutL | VF_A0237 | VF_2325 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Methyl-directed mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.632 |
| rscS | sypA | VF_A0237 | VF_A1020 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. | 0.962 |
| rscS | sypE | VF_A0237 | VF_A1024 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.996 |
| rscS | sypF | VF_A0237 | VF_A1025 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Two-component hybrid sensor histidine kinase; Syp polysaccharide locus. | 0.994 |
| rscS | sypG | VF_A0237 | VF_A1026 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Sigma-54 dependent transcriptional regulator; Syp polysaccharide locus. | 0.943 |
| rscS | vpsR | VF_A0237 | VF_0454 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Sigma-54 dependent transcriptional regulator VpsR. | 0.794 |
| sypA | VF_1432 | VF_A1020 | VF_1432 | Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. | Predicted DNA-binding protein; Belongs to the UPF0251 family. | 0.495 |
| sypA | mutL | VF_A1020 | VF_2325 | Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. | Methyl-directed mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.441 |
| sypA | rscS | VF_A1020 | VF_A0237 | Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.962 |
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