Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ainS | rpoN | VF_1037 | VF_0387 | C8-HSL autoinducer synthesis protein AinS. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.441 |
| ainS | rscS | VF_1037 | VF_A0237 | C8-HSL autoinducer synthesis protein AinS. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.486 |
| comE | tfoX1 | VF_0801 | VF_0896 | ComE-related protein. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.456 |
| comE | tfoX2 | VF_0801 | VF_1573 | ComE-related protein. | DNA transformation protein TfoX2 (Sxy); Required for efficient DNA transformation jointly with TfoX1. Belongs to the TfoX family. | 0.445 |
| polB | recA | VF_1628 | VF_0535 | DNA polymerase II. | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.887 |
| polB | tfoX1 | VF_1628 | VF_0896 | DNA polymerase II. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.445 |
| recA | polB | VF_0535 | VF_1628 | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | DNA polymerase II. | 0.887 |
| recA | rpoN | VF_0535 | VF_0387 | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.455 |
| recA | rscS | VF_0535 | VF_A0237 | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.559 |
| recA | tfoX1 | VF_0535 | VF_0896 | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.534 |
| rpoN | ainS | VF_0387 | VF_1037 | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | C8-HSL autoinducer synthesis protein AinS. | 0.441 |
| rpoN | recA | VF_0387 | VF_0535 | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.455 |
| rpoN | rscS | VF_0387 | VF_A0237 | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.679 |
| rscS | ainS | VF_A0237 | VF_1037 | Hybrid sensor kinase RscS; Activator of syp locus genes. | C8-HSL autoinducer synthesis protein AinS. | 0.486 |
| rscS | recA | VF_A0237 | VF_0535 | Hybrid sensor kinase RscS; Activator of syp locus genes. | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.559 |
| rscS | rpoN | VF_A0237 | VF_0387 | Hybrid sensor kinase RscS; Activator of syp locus genes. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.679 |
| rscS | tfoX1 | VF_A0237 | VF_0896 | Hybrid sensor kinase RscS; Activator of syp locus genes. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.491 |
| tfoX1 | comE | VF_0896 | VF_0801 | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | ComE-related protein. | 0.456 |
| tfoX1 | polB | VF_0896 | VF_1628 | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | DNA polymerase II. | 0.445 |
| tfoX1 | recA | VF_0896 | VF_0535 | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.534 |
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