STRINGSTRING
pilU pilU motY motY VF_1466 VF_1466 flgF flgF pilD pilD yjeE yjeE rscS rscS mifB mifB sypA sypA sypE sypE sypG sypG ibpA ibpA mshA mshA rpoN rpoN pilT pilT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pilUPili retraction protein PilU. (366 aa)
motYFlagellar motor protein MotY. (292 aa)
VF_1466Small heat shock protein; Belongs to the small heat shock protein (HSP20) family. (140 aa)
flgFFlagellar proximal rod protein FlgF. (249 aa)
pilDType 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (295 aa)
yjeEATPase with strong ADP affinity. (154 aa)
rscSHybrid sensor kinase RscS; Activator of syp locus genes. (927 aa)
mifBDiguanylate cyclase (GGDEF), inhibitor of flagellar motility. (656 aa)
sypAPutative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. (105 aa)
sypETwo-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. (505 aa)
sypGSigma-54 dependent transcriptional regulator; Syp polysaccharide locus. (500 aa)
ibpAHeat shock chaperone; Belongs to the small heat shock protein (HSP20) family. (144 aa)
mshAMSHA pilin protein MshA. (154 aa)
rpoNRNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (489 aa)
pilTPredicted transporter. (345 aa)
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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