Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| hfq | litR | VF_2323 | VF_2177 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Quorum sensing transcriptional regulator LitR (HapR). | 0.550 |
| hfq | luxO | VF_2323 | VF_0937 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Autoinducer repressor protein LuxO. | 0.734 |
| hfq | luxP | VF_2323 | VF_0707 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Periplasmic AI-2 binding protein LuxP. | 0.528 |
| hfq | luxQ | VF_2323 | VF_0708 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Membrane-bound sensor histidine kinase LuxQ. | 0.589 |
| hfq | luxU | VF_2323 | VF_0938 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Autoinducer phosphorelay protein LuxU. | 0.642 |
| hfq | rpoS | VF_2323 | VF_2067 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | RNA polymerase, sigma-S (sigma-38) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.634 |
| hlyU | rpoS | VF_0463 | VF_2067 | Transcriptional activator HlyU. | RNA polymerase, sigma-S (sigma-38) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.459 |
| hlyU | rtxA1 | VF_0463 | VF_1506 | Transcriptional activator HlyU. | RTX (repeats in toxin) calcium-binding cytotoxin RtxA1. | 0.692 |
| litR | hfq | VF_2177 | VF_2323 | Quorum sensing transcriptional regulator LitR (HapR). | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.550 |
| litR | luxO | VF_2177 | VF_0937 | Quorum sensing transcriptional regulator LitR (HapR). | Autoinducer repressor protein LuxO. | 0.770 |
| litR | luxP | VF_2177 | VF_0707 | Quorum sensing transcriptional regulator LitR (HapR). | Periplasmic AI-2 binding protein LuxP. | 0.702 |
| litR | luxQ | VF_2177 | VF_0708 | Quorum sensing transcriptional regulator LitR (HapR). | Membrane-bound sensor histidine kinase LuxQ. | 0.616 |
| litR | luxU | VF_2177 | VF_0938 | Quorum sensing transcriptional regulator LitR (HapR). | Autoinducer phosphorelay protein LuxU. | 0.750 |
| litR | rpoS | VF_2177 | VF_2067 | Quorum sensing transcriptional regulator LitR (HapR). | RNA polymerase, sigma-S (sigma-38) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.548 |
| litR | vpsT | VF_2177 | VF_2408 | Quorum sensing transcriptional regulator LitR (HapR). | DNA-binding transcriptional activator VpsT (CsgD-like). | 0.480 |
| luxO | hfq | VF_0937 | VF_2323 | Autoinducer repressor protein LuxO. | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.734 |
| luxO | litR | VF_0937 | VF_2177 | Autoinducer repressor protein LuxO. | Quorum sensing transcriptional regulator LitR (HapR). | 0.770 |
| luxO | luxP | VF_0937 | VF_0707 | Autoinducer repressor protein LuxO. | Periplasmic AI-2 binding protein LuxP. | 0.821 |
| luxO | luxQ | VF_0937 | VF_0708 | Autoinducer repressor protein LuxO. | Membrane-bound sensor histidine kinase LuxQ. | 0.868 |
| luxO | luxU | VF_0937 | VF_0938 | Autoinducer repressor protein LuxO. | Autoinducer phosphorelay protein LuxU. | 0.996 |
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