Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VF_1598 | acs | VF_1598 | VF_2383 | Exochitinase. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.488 |
| VF_1598 | ainR | VF_1598 | VF_1036 | Exochitinase. | Putative autoinducer regulatory protein AinR. | 0.529 |
| VF_1598 | ainS | VF_1598 | VF_1037 | Exochitinase. | C8-HSL autoinducer synthesis protein AinS. | 0.454 |
| VF_1598 | chiA | VF_1598 | VF_0655 | Exochitinase. | Endochitinase. | 0.978 |
| VF_1598 | litR | VF_1598 | VF_2177 | Exochitinase. | Quorum sensing transcriptional regulator LitR (HapR). | 0.495 |
| VF_1598 | luxO | VF_1598 | VF_0937 | Exochitinase. | Autoinducer repressor protein LuxO. | 0.441 |
| VF_1598 | luxR | VF_1598 | VF_A0925 | Exochitinase. | Autoinducer-binding transcriptional activator protein LuxR; Transcriptional activator of the bioluminescence operon. Binds to the OHHL autoinducer. | 0.450 |
| VF_1598 | rpoQ | VF_1598 | VF_A1015 | Exochitinase. | sigma-Q factor RpoQ, quorum-sensing regulated RpoS-like sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.499 |
| acs | VF_1598 | VF_2383 | VF_1598 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | Exochitinase. | 0.488 |
| acs | ainR | VF_2383 | VF_1036 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | Putative autoinducer regulatory protein AinR. | 0.468 |
| acs | ainS | VF_2383 | VF_1037 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | C8-HSL autoinducer synthesis protein AinS. | 0.572 |
| acs | chiA | VF_2383 | VF_0655 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | Endochitinase. | 0.450 |
| acs | litR | VF_2383 | VF_2177 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | Quorum sensing transcriptional regulator LitR (HapR). | 0.499 |
| acs | luxR | VF_2383 | VF_A0925 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | Autoinducer-binding transcriptional activator protein LuxR; Transcriptional activator of the bioluminescence operon. Binds to the OHHL autoinducer. | 0.445 |
| ainR | VF_1598 | VF_1036 | VF_1598 | Putative autoinducer regulatory protein AinR. | Exochitinase. | 0.529 |
| ainR | acs | VF_1036 | VF_2383 | Putative autoinducer regulatory protein AinR. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.468 |
| ainR | ainS | VF_1036 | VF_1037 | Putative autoinducer regulatory protein AinR. | C8-HSL autoinducer synthesis protein AinS. | 0.997 |
| ainR | arcB | VF_1036 | VF_2122 | Putative autoinducer regulatory protein AinR. | Hybrid sensory histidine kinase in two-component regulatory system with ArcA. | 0.990 |
| ainR | cheA | VF_1036 | VF_1831 | Putative autoinducer regulatory protein AinR. | Chemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY. | 0.640 |
| ainR | chiA | VF_1036 | VF_0655 | Putative autoinducer regulatory protein AinR. | Endochitinase. | 0.637 |
page 1 of 15