STRINGSTRING
arcB arcB litR litR nsrR nsrR hmp hmp rscS rscS luxB luxB luxA luxA luxI luxI luxR luxR sypA sypA sypE sypE sypF sypF sypG sypG flaA flaA pgk pgk vpsR vpsR luxS luxS luxP luxP luxO luxO luxU luxU ainR ainR ainS ainS cheW cheW cheA cheA cheY cheY fliA fliA flrC flrC flrB flrB flrA flrA flaE flaE flaD flaD flaC flaC flaB flaB rpoN rpoN cheR cheR glnD glnD flaF flaF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
arcBHybrid sensory histidine kinase in two-component regulatory system with ArcA. (788 aa)
litRQuorum sensing transcriptional regulator LitR (HapR). (201 aa)
nsrRNitrite-responsive HTH-type transcriptional repressor NsrR; Nitric oxide-sensitive repressor of genes involved in protecting the cell against nitrosative stress. May require iron for activity. (141 aa)
hmpFused nitric oxide dioxygenase/dihydropteridine reductase 2; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily. (394 aa)
rscSHybrid sensor kinase RscS; Activator of syp locus genes. (927 aa)
luxBLuciferase beta chain LuxB. (326 aa)
luxALuciferase alpha chain LuxA. (355 aa)
luxI3-oxo-C6-HSL autoinducer synthesis protein LuxI; Required for the synthesis of OHHL (N-(3-oxohexanoyl)-L- homoserine lactone) also known as VAI or N-(beta-ketocaproyl)homoserine lactone or 3-oxo-N-(tetrahydro-2-oxo-3-furanyl)-hexanamide, an autoinducer molecule which binds to LuxR and thus acts in bioluminescence regulation. (190 aa)
luxRAutoinducer-binding transcriptional activator protein LuxR; Transcriptional activator of the bioluminescence operon. Binds to the OHHL autoinducer. (250 aa)
sypAPutative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus. (105 aa)
sypETwo-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. (505 aa)
sypFTwo-component hybrid sensor histidine kinase; Syp polysaccharide locus. (766 aa)
sypGSigma-54 dependent transcriptional regulator; Syp polysaccharide locus. (500 aa)
flaAFlagellin FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (379 aa)
pgkPhosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (387 aa)
vpsRSigma-54 dependent transcriptional regulator VpsR. (445 aa)
luxSS-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (172 aa)
luxPPeriplasmic AI-2 binding protein LuxP. (372 aa)
luxOAutoinducer repressor protein LuxO. (476 aa)
luxUAutoinducer phosphorelay protein LuxU. (118 aa)
ainRPutative autoinducer regulatory protein AinR. (819 aa)
ainSC8-HSL autoinducer synthesis protein AinS. (380 aa)
cheWChemotaxis coupling protein CheW. (164 aa)
cheAChemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY. (735 aa)
cheYChemotaxis regulator CheY, transmits signal to flagellar motor component. (122 aa)
fliARNA polymerase, sigma-28 (sigma-F, FliA) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (243 aa)
flrCTwo-component response regulator FlrC. (477 aa)
flrBSensory histidine kinase FlrB. (353 aa)
flrASigma-54-dependent transcriptional activator FlrA. (493 aa)
flaEFlagellin FlaE; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (398 aa)
flaDFlagellin FlaD; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (375 aa)
flaCFlagellin FlaC; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (377 aa)
flaBFlagellin FlaB; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (377 aa)
rpoNRNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (489 aa)
cheRChemotaxis regulator, protein-glutamate methyltransferase, CheR. (275 aa)
glnDUridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. (873 aa)
flaFFlagellin FlaF; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (377 aa)
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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