Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ainS | luxU | VF_1037 | VF_0938 | C8-HSL autoinducer synthesis protein AinS. | Autoinducer phosphorelay protein LuxU. | 0.719 |
| ainS | rpoN | VF_1037 | VF_0387 | C8-HSL autoinducer synthesis protein AinS. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.441 |
| ansA | ansB | VF_1644 | VF_1527 | Cytoplasmic L-asparaginase I. | Periplasmic L-asparaginase II; Belongs to the asparaginase 1 family. | 0.940 |
| ansA | aspA | VF_1644 | VF_2353 | Cytoplasmic L-asparaginase I. | Aspartate ammonia-lyase. | 0.984 |
| ansA | yeeZ | VF_1644 | VF_1388 | Cytoplasmic L-asparaginase I. | Predicted epimerase, with NAD(P)-binding Rossmann-fold domain. | 0.440 |
| ansA | ygeA | VF_1644 | VF_A0624 | Cytoplasmic L-asparaginase I. | Predicted racemase. | 0.954 |
| ansB | ansA | VF_1527 | VF_1644 | Periplasmic L-asparaginase II; Belongs to the asparaginase 1 family. | Cytoplasmic L-asparaginase I. | 0.940 |
| ansB | aspA | VF_1527 | VF_2353 | Periplasmic L-asparaginase II; Belongs to the asparaginase 1 family. | Aspartate ammonia-lyase. | 0.984 |
| ansB | yeeZ | VF_1527 | VF_1388 | Periplasmic L-asparaginase II; Belongs to the asparaginase 1 family. | Predicted epimerase, with NAD(P)-binding Rossmann-fold domain. | 0.440 |
| ansB | ygeA | VF_1527 | VF_A0624 | Periplasmic L-asparaginase II; Belongs to the asparaginase 1 family. | Predicted racemase. | 0.954 |
| aspA | ansA | VF_2353 | VF_1644 | Aspartate ammonia-lyase. | Cytoplasmic L-asparaginase I. | 0.984 |
| aspA | ansB | VF_2353 | VF_1527 | Aspartate ammonia-lyase. | Periplasmic L-asparaginase II; Belongs to the asparaginase 1 family. | 0.984 |
| aspA | ygeA | VF_2353 | VF_A0624 | Aspartate ammonia-lyase. | Predicted racemase. | 0.945 |
| luxU | ainS | VF_0938 | VF_1037 | Autoinducer phosphorelay protein LuxU. | C8-HSL autoinducer synthesis protein AinS. | 0.719 |
| luxU | rpoN | VF_0938 | VF_0387 | Autoinducer phosphorelay protein LuxU. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.402 |
| rpoB | rpoN | VF_2414 | VF_0387 | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.883 |
| rpoB | ygeA | VF_2414 | VF_A0624 | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Predicted racemase. | 0.493 |
| rpoN | ainS | VF_0387 | VF_1037 | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | C8-HSL autoinducer synthesis protein AinS. | 0.441 |
| rpoN | luxU | VF_0387 | VF_0938 | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Autoinducer phosphorelay protein LuxU. | 0.402 |
| rpoN | rpoB | VF_0387 | VF_2414 | RNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.883 |
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