STRINGSTRING
yfcE yfcE rscS rscS glpR glpR VF_A0344 VF_A0344 VF_A0551 VF_A0551 VF_A0706 VF_A0706 VF_A0879 VF_A0879 VF_A1014 VF_A1014 sypG sypG VF_A1076 VF_A1076
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yfcEPredicted phosphatase. (183 aa)
rscSHybrid sensor kinase RscS; Activator of syp locus genes. (927 aa)
glpRGlycerol-3-phosphate regulon repressor protein GlpR. (255 aa)
VF_A0344EAL domain protein. (476 aa)
VF_A0551EAL domain protein. (266 aa)
VF_A0706EAL domain protein. (677 aa)
VF_A0879EAL domain protein. (295 aa)
VF_A1014EAL domain protein; Likely cotranscribed with rpoQ, quorum-sensing-regulated (C8-HSL). (526 aa)
sypGSigma-54 dependent transcriptional regulator; Syp polysaccharide locus. (500 aa)
VF_A1076EAL domain protein. (237 aa)
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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