Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BinK | VF_A0881 | VF_A0360 | VF_A0881 | Sensor histidine kinase, GacS/BarA family. | Cellulose synthase operon C protein. | 0.493 |
| BinK | rscS | VF_A0360 | VF_A0237 | Sensor histidine kinase, GacS/BarA family. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.989 |
| BinK | sypE | VF_A0360 | VF_A1024 | Sensor histidine kinase, GacS/BarA family. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.809 |
| BinK | sypK | VF_A0360 | VF_A1030 | Sensor histidine kinase, GacS/BarA family. | Oligosaccharide translocase; Syp polysaccharide locus. | 0.441 |
| VF_A0881 | BinK | VF_A0881 | VF_A0360 | Cellulose synthase operon C protein. | Sensor histidine kinase, GacS/BarA family. | 0.493 |
| ainS | litR | VF_1037 | VF_2177 | C8-HSL autoinducer synthesis protein AinS. | Quorum sensing transcriptional regulator LitR (HapR). | 0.738 |
| ainS | luxI | VF_1037 | VF_A0924 | C8-HSL autoinducer synthesis protein AinS. | 3-oxo-C6-HSL autoinducer synthesis protein LuxI; Required for the synthesis of OHHL (N-(3-oxohexanoyl)-L- homoserine lactone) also known as VAI or N-(beta-ketocaproyl)homoserine lactone or 3-oxo-N-(tetrahydro-2-oxo-3-furanyl)-hexanamide, an autoinducer molecule which binds to LuxR and thus acts in bioluminescence regulation. | 0.978 |
| ainS | luxO | VF_1037 | VF_0937 | C8-HSL autoinducer synthesis protein AinS. | Autoinducer repressor protein LuxO. | 0.714 |
| ainS | luxR | VF_1037 | VF_A0925 | C8-HSL autoinducer synthesis protein AinS. | Autoinducer-binding transcriptional activator protein LuxR; Transcriptional activator of the bioluminescence operon. Binds to the OHHL autoinducer. | 0.722 |
| ainS | rscS | VF_1037 | VF_A0237 | C8-HSL autoinducer synthesis protein AinS. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.486 |
| fliA | fliP | VF_1834 | VF_1842 | RNA polymerase, sigma-28 (sigma-F, FliA) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | 0.868 |
| fliA | rscS | VF_1834 | VF_A0237 | RNA polymerase, sigma-28 (sigma-F, FliA) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.598 |
| fliA | sypE | VF_1834 | VF_A1024 | RNA polymerase, sigma-28 (sigma-F, FliA) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.870 |
| fliP | fliA | VF_1842 | VF_1834 | Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | RNA polymerase, sigma-28 (sigma-F, FliA) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.868 |
| fliP | luxO | VF_1842 | VF_0937 | Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | Autoinducer repressor protein LuxO. | 0.452 |
| fliP | rscS | VF_1842 | VF_A0237 | Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.763 |
| fliP | sypE | VF_1842 | VF_A1024 | Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.618 |
| litR | ainS | VF_2177 | VF_1037 | Quorum sensing transcriptional regulator LitR (HapR). | C8-HSL autoinducer synthesis protein AinS. | 0.738 |
| litR | luxI | VF_2177 | VF_A0924 | Quorum sensing transcriptional regulator LitR (HapR). | 3-oxo-C6-HSL autoinducer synthesis protein LuxI; Required for the synthesis of OHHL (N-(3-oxohexanoyl)-L- homoserine lactone) also known as VAI or N-(beta-ketocaproyl)homoserine lactone or 3-oxo-N-(tetrahydro-2-oxo-3-furanyl)-hexanamide, an autoinducer molecule which binds to LuxR and thus acts in bioluminescence regulation. | 0.693 |
| litR | luxO | VF_2177 | VF_0937 | Quorum sensing transcriptional regulator LitR (HapR). | Autoinducer repressor protein LuxO. | 0.770 |
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