Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BinK | VF_1396 | VF_A0360 | VF_1396 | Sensor histidine kinase, GacS/BarA family. | DNA-binding response regulator. | 0.696 |
| BinK | rscS | VF_A0360 | VF_A0237 | Sensor histidine kinase, GacS/BarA family. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.989 |
| BinK | sypE | VF_A0360 | VF_A1024 | Sensor histidine kinase, GacS/BarA family. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.809 |
| BinK | sypF | VF_A0360 | VF_A1025 | Sensor histidine kinase, GacS/BarA family. | Two-component hybrid sensor histidine kinase; Syp polysaccharide locus. | 0.985 |
| BinK | sypG | VF_A0360 | VF_A1026 | Sensor histidine kinase, GacS/BarA family. | Sigma-54 dependent transcriptional regulator; Syp polysaccharide locus. | 0.743 |
| BinK | tfoX1 | VF_A0360 | VF_0896 | Sensor histidine kinase, GacS/BarA family. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.450 |
| VF_1396 | BinK | VF_1396 | VF_A0360 | DNA-binding response regulator. | Sensor histidine kinase, GacS/BarA family. | 0.696 |
| VF_1396 | rscS | VF_1396 | VF_A0237 | DNA-binding response regulator. | Hybrid sensor kinase RscS; Activator of syp locus genes. | 0.947 |
| VF_1396 | sypE | VF_1396 | VF_A1024 | DNA-binding response regulator. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.549 |
| VF_1396 | sypF | VF_1396 | VF_A1025 | DNA-binding response regulator. | Two-component hybrid sensor histidine kinase; Syp polysaccharide locus. | 0.847 |
| glmS | tfoX1 | VF_2372 | VF_0896 | L-glutamine:D-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.636 |
| glmS | yeiR | VF_2372 | VF_2370 | L-glutamine:D-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | Predicted enzyme. | 0.798 |
| rscS | BinK | VF_A0237 | VF_A0360 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Sensor histidine kinase, GacS/BarA family. | 0.989 |
| rscS | VF_1396 | VF_A0237 | VF_1396 | Hybrid sensor kinase RscS; Activator of syp locus genes. | DNA-binding response regulator. | 0.947 |
| rscS | sypE | VF_A0237 | VF_A1024 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | 0.996 |
| rscS | sypF | VF_A0237 | VF_A1025 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Two-component hybrid sensor histidine kinase; Syp polysaccharide locus. | 0.994 |
| rscS | sypG | VF_A0237 | VF_A1026 | Hybrid sensor kinase RscS; Activator of syp locus genes. | Sigma-54 dependent transcriptional regulator; Syp polysaccharide locus. | 0.943 |
| rscS | tfoX1 | VF_A0237 | VF_0896 | Hybrid sensor kinase RscS; Activator of syp locus genes. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.491 |
| sypE | BinK | VF_A1024 | VF_A0360 | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | Sensor histidine kinase, GacS/BarA family. | 0.809 |
| sypE | VF_1396 | VF_A1024 | VF_1396 | Two-component response regulator, sigma factor PP2C-like phosphatase; Syp polysaccharide locus. | DNA-binding response regulator. | 0.549 |
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