Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ainR | ainS | VF_1036 | VF_1037 | Putative autoinducer regulatory protein AinR. | C8-HSL autoinducer synthesis protein AinS. | 0.997 |
| ainR | luxA | VF_1036 | VF_A0921 | Putative autoinducer regulatory protein AinR. | Luciferase alpha chain LuxA. | 0.444 |
| ainR | luxI | VF_1036 | VF_A0924 | Putative autoinducer regulatory protein AinR. | 3-oxo-C6-HSL autoinducer synthesis protein LuxI; Required for the synthesis of OHHL (N-(3-oxohexanoyl)-L- homoserine lactone) also known as VAI or N-(beta-ketocaproyl)homoserine lactone or 3-oxo-N-(tetrahydro-2-oxo-3-furanyl)-hexanamide, an autoinducer molecule which binds to LuxR and thus acts in bioluminescence regulation. | 0.728 |
| ainR | luxO | VF_1036 | VF_0937 | Putative autoinducer regulatory protein AinR. | Autoinducer repressor protein LuxO. | 0.817 |
| ainR | luxS | VF_1036 | VF_0545 | Putative autoinducer regulatory protein AinR. | S-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.746 |
| ainR | luxU | VF_1036 | VF_0938 | Putative autoinducer regulatory protein AinR. | Autoinducer phosphorelay protein LuxU. | 0.983 |
| ainR | tfoX1 | VF_1036 | VF_0896 | Putative autoinducer regulatory protein AinR. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.447 |
| ainS | ainR | VF_1037 | VF_1036 | C8-HSL autoinducer synthesis protein AinS. | Putative autoinducer regulatory protein AinR. | 0.997 |
| ainS | luxA | VF_1037 | VF_A0921 | C8-HSL autoinducer synthesis protein AinS. | Luciferase alpha chain LuxA. | 0.453 |
| ainS | luxI | VF_1037 | VF_A0924 | C8-HSL autoinducer synthesis protein AinS. | 3-oxo-C6-HSL autoinducer synthesis protein LuxI; Required for the synthesis of OHHL (N-(3-oxohexanoyl)-L- homoserine lactone) also known as VAI or N-(beta-ketocaproyl)homoserine lactone or 3-oxo-N-(tetrahydro-2-oxo-3-furanyl)-hexanamide, an autoinducer molecule which binds to LuxR and thus acts in bioluminescence regulation. | 0.978 |
| ainS | luxO | VF_1037 | VF_0937 | C8-HSL autoinducer synthesis protein AinS. | Autoinducer repressor protein LuxO. | 0.714 |
| ainS | luxS | VF_1037 | VF_0545 | C8-HSL autoinducer synthesis protein AinS. | S-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.726 |
| ainS | luxU | VF_1037 | VF_0938 | C8-HSL autoinducer synthesis protein AinS. | Autoinducer phosphorelay protein LuxU. | 0.719 |
| hfq | luxI | VF_2323 | VF_A0924 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 3-oxo-C6-HSL autoinducer synthesis protein LuxI; Required for the synthesis of OHHL (N-(3-oxohexanoyl)-L- homoserine lactone) also known as VAI or N-(beta-ketocaproyl)homoserine lactone or 3-oxo-N-(tetrahydro-2-oxo-3-furanyl)-hexanamide, an autoinducer molecule which binds to LuxR and thus acts in bioluminescence regulation. | 0.451 |
| hfq | luxO | VF_2323 | VF_0937 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Autoinducer repressor protein LuxO. | 0.734 |
| hfq | luxS | VF_2323 | VF_0545 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | S-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.640 |
| hfq | luxU | VF_2323 | VF_0938 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Autoinducer phosphorelay protein LuxU. | 0.642 |
| hfq | tfoX1 | VF_2323 | VF_0896 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. | 0.441 |
| luxA | ainR | VF_A0921 | VF_1036 | Luciferase alpha chain LuxA. | Putative autoinducer regulatory protein AinR. | 0.444 |
| luxA | ainS | VF_A0921 | VF_1037 | Luciferase alpha chain LuxA. | C8-HSL autoinducer synthesis protein AinS. | 0.453 |
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