STRINGSTRING
rpoN rpoN clpB clpB chiS chiS rpoE rpoE gacS gacS rpoS rpoS phoB phoB phoR phoR aceA aceA fliI fliI cspD cspD gacA gacA tfoX2 tfoX2 luxU luxU luxO luxO lrp lrp tfoX1 tfoX1 cueR cueR ybeY ybeY luxQ luxQ luxP luxP ftsZ ftsZ phoP phoP sagP sagP ompA ompA cspG cspG luxR luxR hcp hcp VF_A0595 VF_A0595 tcpH tcpH tcpP tcpP modA modA VF_A0013 VF_A0013 VF_2561 VF_2561 oxyR oxyR pitA pitA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoNRNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (489 aa)
clpBProtein disaggregation chaperone; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (861 aa)
chiSChitin sensor histidine kinase ChiS. (1126 aa)
rpoERNA polymerase, sigma-24 (sigma-E) factor; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
gacSHybrid sensory histidine kinase, in two-component regulatory system with GacA. (931 aa)
rpoSRNA polymerase, sigma-S (sigma-38) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (321 aa)
phoBDNA-binding response regulator in two-component regulatory system with PhoR. (230 aa)
phoRSensory histidine kinase in two-component regulatory system with PhoB. (431 aa)
aceAIsocitrate lyase. (442 aa)
fliIFlagellum-specific ATP synthase FliI. (439 aa)
cspDDNA replication inhibitor. (73 aa)
gacADNA-binding response regulator in two-component regulatory system with GacS. (214 aa)
tfoX2DNA transformation protein TfoX2 (Sxy); Required for efficient DNA transformation jointly with TfoX1. Belongs to the TfoX family. (195 aa)
luxUAutoinducer phosphorelay protein LuxU. (118 aa)
luxOAutoinducer repressor protein LuxO. (476 aa)
lrpDNA-binding transcriptional dual regulator, leucine-binding. (163 aa)
tfoX1DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2. (209 aa)
cueRDNA-binding transcriptional activator of copper-responsive regulon genes. (133 aa)
ybeYConserved protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (153 aa)
luxQMembrane-bound sensor histidine kinase LuxQ. (744 aa)
luxPPeriplasmic AI-2 binding protein LuxP. (372 aa)
ftsZGTP-binding tubulin-like cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (416 aa)
phoPDNA-binding response regulator in two-component regulatory system with PhoQ. (226 aa)
sagPArginine deiminase SagP (ArcA). (406 aa)
ompAOuter membrane protein A; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (324 aa)
cspGDNA-binding transcriptional regulator. (69 aa)
luxRAutoinducer-binding transcriptional activator protein LuxR; Transcriptional activator of the bioluminescence operon. Binds to the OHHL autoinducer. (250 aa)
hcpHydroxylamine reductase Hcp; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (553 aa)
VF_A0595Cold shock protein. (68 aa)
tcpHTcpH protein. (129 aa)
tcpPTranscriptional regulatory protein TcpP. (203 aa)
modAMolybdate ABC transporter, periplasmic molybdate-binding protein. (245 aa)
VF_A0013Chitin-binding protein. (392 aa)
VF_2561Cold shock protein. (69 aa)
oxyROxidative stress-responsive DNA-binding transcriptional regulator OxyR; Belongs to the LysR transcriptional regulatory family. (299 aa)
pitAPhosphate transporter, low-affinity. (426 aa)
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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