(11 nodes) Laminin, N-terminal, and Integrin network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-lam-2	CRE-LAM-2 protein. (1550 aa)
	CRE_00095	Uncharacterized protein. (86 aa)
	Cre-ina-1	CRE-INA-1 protein; Belongs to the integrin alpha chain family. (1145 aa)
	Cre-lam-3	CRE-LAM-3 protein. (3122 aa)
	Cre-epi-1	CRE-EPI-1 protein. (3753 aa)
	Cre-pat-3	Integrin beta; Belongs to the integrin beta chain family. (829 aa)
	CRE_07653	Uncharacterized protein. (193 aa)
	CRE_22899	Laminin N-terminal domain-containing protein. (262 aa)
	CRE_21031	Uncharacterized protein. (1062 aa)
	Cre-lam-1	CRE-LAM-1 protein. (1264 aa)
	CRE_07192	Uncharacterized protein. (456 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00095	CRE_07192	E3LD48	E3NVQ7	Uncharacterized protein.	Uncharacterized protein.	0.929
CRE_00095	CRE_07653	E3LD48	E3MP40	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_00095	CRE_21031	E3LD48	E3NND4	Uncharacterized protein.	Uncharacterized protein.	0.929
CRE_00095	CRE_22899	E3LD48	E3MW02	Uncharacterized protein.	Laminin N-terminal domain-containing protein.	0.929
CRE_00095	Cre-epi-1	E3LD48	E3M5E7	Uncharacterized protein.	CRE-EPI-1 protein.	0.929
CRE_00095	Cre-ina-1	E3LD48	E3LSL7	Uncharacterized protein.	CRE-INA-1 protein; Belongs to the integrin alpha chain family.	0.849
CRE_00095	Cre-lam-1	E3LD48	E3NQJ8	Uncharacterized protein.	CRE-LAM-1 protein.	0.871
CRE_00095	Cre-lam-3	E3LD48	E3LVX7	Uncharacterized protein.	CRE-LAM-3 protein.	0.969
CRE_00095	Cre-pat-3	E3LD48	E3M8G5	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.955
CRE_07192	CRE_00095	E3NVQ7	E3LD48	Uncharacterized protein.	Uncharacterized protein.	0.929
CRE_07192	CRE_07653	E3NVQ7	E3MP40	Uncharacterized protein.	Uncharacterized protein.	0.949
CRE_07192	CRE_21031	E3NVQ7	E3NND4	Uncharacterized protein.	Uncharacterized protein.	0.933
CRE_07192	CRE_22899	E3NVQ7	E3MW02	Uncharacterized protein.	Laminin N-terminal domain-containing protein.	0.931
CRE_07192	Cre-ina-1	E3NVQ7	E3LSL7	Uncharacterized protein.	CRE-INA-1 protein; Belongs to the integrin alpha chain family.	0.968
CRE_07192	Cre-lam-1	E3NVQ7	E3NQJ8	Uncharacterized protein.	CRE-LAM-1 protein.	0.773
CRE_07192	Cre-lam-2	E3NVQ7	E3LD47	Uncharacterized protein.	CRE-LAM-2 protein.	0.933
CRE_07192	Cre-lam-3	E3NVQ7	E3LVX7	Uncharacterized protein.	CRE-LAM-3 protein.	0.886
CRE_07192	Cre-pat-3	E3NVQ7	E3M8G5	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.940
CRE_07653	CRE_00095	E3MP40	E3LD48	Uncharacterized protein.	Uncharacterized protein.	0.871
CRE_07653	CRE_07192	E3MP40	E3NVQ7	Uncharacterized protein.	Uncharacterized protein.	0.949