(6 nodes) Synaptic transmission, GABAergic, and Germ-line stem cell population maintenance network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_08302	Protein kinase domain-containing protein. (378 aa)
	Cre-cdka-1	Cyclin-dependent kinase 5 activator. (382 aa)
	Cre-ptl-1	Microtubule-associated protein. (306 aa)
	Cre-cdk-5	CRE-CDK-5 protein; Belongs to the protein kinase superfamily. (292 aa)
	Cre-flp-6	CRE-FLP-6 protein. (169 aa)
	CRE_23236	Uncharacterized protein. (171 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_08302	CRE_23236	E3M3K4	E3NQH4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.741
CRE_08302	Cre-cdk-5	E3M3K4	E3NAD1	Protein kinase domain-containing protein.	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	0.682
CRE_08302	Cre-cdka-1	E3M3K4	E3MCV5	Protein kinase domain-containing protein.	Cyclin-dependent kinase 5 activator.	0.694
CRE_08302	Cre-flp-6	E3M3K4	E3NCZ8	Protein kinase domain-containing protein.	CRE-FLP-6 protein.	0.741
CRE_08302	Cre-ptl-1	E3M3K4	E3ML96	Protein kinase domain-containing protein.	Microtubule-associated protein.	0.741
CRE_23236	CRE_08302	E3NQH4	E3M3K4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.741
CRE_23236	Cre-cdk-5	E3NQH4	E3NAD1	Uncharacterized protein.	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	0.931
CRE_23236	Cre-cdka-1	E3NQH4	E3MCV5	Uncharacterized protein.	Cyclin-dependent kinase 5 activator.	0.770
CRE_23236	Cre-ptl-1	E3NQH4	E3ML96	Uncharacterized protein.	Microtubule-associated protein.	0.663
Cre-cdk-5	CRE_08302	E3NAD1	E3M3K4	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.682
Cre-cdk-5	CRE_23236	E3NAD1	E3NQH4	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.931
Cre-cdk-5	Cre-cdka-1	E3NAD1	E3MCV5	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator.	0.998
Cre-cdk-5	Cre-flp-6	E3NAD1	E3NCZ8	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	CRE-FLP-6 protein.	0.931
Cre-cdk-5	Cre-ptl-1	E3NAD1	E3ML96	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.988
Cre-cdka-1	CRE_08302	E3MCV5	E3M3K4	Cyclin-dependent kinase 5 activator.	Protein kinase domain-containing protein.	0.694
Cre-cdka-1	CRE_23236	E3MCV5	E3NQH4	Cyclin-dependent kinase 5 activator.	Uncharacterized protein.	0.770
Cre-cdka-1	Cre-cdk-5	E3MCV5	E3NAD1	Cyclin-dependent kinase 5 activator.	CRE-CDK-5 protein; Belongs to the protein kinase superfamily.	0.998
Cre-cdka-1	Cre-flp-6	E3MCV5	E3NCZ8	Cyclin-dependent kinase 5 activator.	CRE-FLP-6 protein.	0.770
Cre-cdka-1	Cre-ptl-1	E3MCV5	E3ML96	Cyclin-dependent kinase 5 activator.	Microtubule-associated protein.	0.909
Cre-flp-6	CRE_08302	E3NCZ8	E3M3K4	CRE-FLP-6 protein.	Protein kinase domain-containing protein.	0.741