(56 nodes) Mixed, incl. Immunoglobulin subtype, and Tetraspanin/Peripherin network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-dim-1	CRE-DIM-1 protein. (324 aa)
	Cre-zig-3	CRE-ZIG-3 protein. (247 aa)
	Cre-zig-4	CRE-ZIG-4 protein. (265 aa)
	Cre-rig-3	CRE-RIG-3 protein. (488 aa)
	CRE_00132	Uncharacterized protein. (358 aa)
	Cre-gei-15	CRE-GEI-15 protein. (414 aa)
	Cre-igcm-2	CRE-IGCM-2 protein. (814 aa)
	Cre-apl-1	CRE-APL-1 protein. (703 aa)
	Cre-tsp-14	Tetraspanin. (456 aa)
	Cre-mig-13	CRE-MIG-13 protein. (455 aa)
	CRE_28619	Uncharacterized protein. (359 aa)
	Cre-tsp-10	CRE-TSP-10 protein; Belongs to the tetraspanin (TM4SF) family. (295 aa)
	CRE_26544	Uncharacterized protein. (325 aa)
	Cre-feh-1	CRE-FEH-1 protein. (687 aa)
	CRE_29750	F-box domain-containing protein. (335 aa)
	CRE_29542	F-box domain-containing protein. (335 aa)
	CRE_03047	Ig-like domain-containing protein. (170 aa)
	Cre-zig-8	CRE-ZIG-8 protein. (65 aa)
	CRE_07524	Uncharacterized protein. (537 aa)
	Cre-syg-1	CRE-SYG-1 protein. (744 aa)
	CRE_07483	Uncharacterized protein. (1580 aa)
	Cre-zig-1	CRE-ZIG-1 protein. (265 aa)
	CRE_08123	Uncharacterized protein. (489 aa)
	Cre-afd-1	CRE-AFD-1 protein. (1310 aa)
	Cre-rig-5	CRE-RIG-5 protein. (379 aa)
	Cre-rig-4	CRE-RIG-4 protein. (2353 aa)
	CRE_12764	Uncharacterized protein. (231 aa)
	Cre-tsp-3	CRE-TSP-3 protein; Belongs to the tetraspanin (TM4SF) family. (222 aa)
	Cre-igcm-1	CRE-IGCM-1 protein. (1063 aa)
	Cre-ncam-1	CRE-NCAM-1 protein. (970 aa)
	Cre-him-4	CRE-HIM-4 protein. (2924 aa)
	CRE_16675	Uncharacterized protein. (1105 aa)
	CRE_16676	Uncharacterized protein. (1247 aa)
	Cre-syg-2	CRE-SYG-2 protein. (1277 aa)
	Cre-slt-1	CRE-SLT-1 protein. (857 aa)
	Cre-tsp-8	Tetraspanin. (282 aa)
	CRE_23438	F-box domain-containing protein. (322 aa)
	CRE_23544	Uncharacterized protein. (83 aa)
	Cre-tsp-13	Tetraspanin. (319 aa)
	Cre-tsp-12	Tetraspanin. (308 aa)
	CRE_03274	Tetraspanin. (305 aa)
	CRE_05001	Uncharacterized protein. (678 aa)
	Cre-tsp-11	Tetraspanin. (278 aa)
	Cre-wrk-1	CRE-WRK-1 protein. (443 aa)
	Cre-rig-1	CRE-RIG-1 protein. (1080 aa)
	CRE_05959	Uncharacterized protein. (253 aa)
	Cre-zoo-1	CRE-ZOO-1 protein. (1201 aa)
	CRE_14252	Peptidase S1 domain-containing protein. (383 aa)
	CRE_24757	Uncharacterized protein. (174 aa)
	CRE_30466	Uncharacterized protein. (254 aa)
	CRE_26820	Uncharacterized protein. (370 aa)
	CRE_10690	Uncharacterized protein. (1461 aa)
	CRE_23188	Uncharacterized protein. (1343 aa)
	CRE_11562	Uncharacterized protein. (243 aa)
	CRE_32630	Uncharacterized protein. (111 aa)
	CRE_26003	CW domain-containing protein. (82 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_00132	CRE_03274	E3LDB1	E3MMD5	Uncharacterized protein.	Tetraspanin.	0.403
CRE_00132	CRE_07524	E3LDB1	E3M287	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_00132	CRE_08123	E3LDB1	E3M3I8	Uncharacterized protein.	Uncharacterized protein.	0.448
CRE_00132	CRE_11562	E3LDB1	E3NNK3	Uncharacterized protein.	Uncharacterized protein.	0.416
CRE_00132	CRE_12764	E3LDB1	E3M7N9	Uncharacterized protein.	Uncharacterized protein.	0.416
CRE_00132	CRE_14252	E3LDB1	E3N7M8	Uncharacterized protein.	Peptidase S1 domain-containing protein.	0.416
CRE_00132	CRE_16675	E3LDB1	E3MB16	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_00132	CRE_16676	E3LDB1	E3MB17	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_00132	CRE_23188	E3LDB1	E3NKY4	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_00132	CRE_23438	E3LDB1	E3MGS0	Uncharacterized protein.	F-box domain-containing protein.	0.416
CRE_00132	CRE_23544	E3LDB1	E3MHA6	Uncharacterized protein.	Uncharacterized protein.	0.403
CRE_00132	CRE_24757	E3LDB1	E3N961	Uncharacterized protein.	Uncharacterized protein.	0.416
CRE_00132	CRE_26003	E3LDB1	E3NS66	Uncharacterized protein.	CW domain-containing protein.	0.595
CRE_00132	CRE_26544	E3LDB1	E3LR59	Uncharacterized protein.	Uncharacterized protein.	0.627
CRE_00132	CRE_28619	E3LDB1	E3LNA4	Uncharacterized protein.	Uncharacterized protein.	0.416
CRE_00132	Cre-afd-1	E3LDB1	E3M3I9	Uncharacterized protein.	CRE-AFD-1 protein.	0.448
CRE_00132	Cre-apl-1	E3LDB1	E3LE65	Uncharacterized protein.	CRE-APL-1 protein.	0.660
CRE_00132	Cre-dim-1	E3LDB1	E3LC84	Uncharacterized protein.	CRE-DIM-1 protein.	0.659
CRE_00132	Cre-him-4	E3LDB1	E3MB14	Uncharacterized protein.	CRE-HIM-4 protein.	0.617
CRE_00132	Cre-igcm-1	E3LDB1	E3MA57	Uncharacterized protein.	CRE-IGCM-1 protein.	0.795