(22 nodes) Immunoglobulin C-2 Type, and ZU5 domain network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-zig-3	CRE-ZIG-3 protein. (247 aa)
	Cre-zig-4	CRE-ZIG-4 protein. (265 aa)
	Cre-rig-3	CRE-RIG-3 protein. (488 aa)
	CRE_26544	Uncharacterized protein. (325 aa)
	Cre-syg-1	CRE-SYG-1 protein. (744 aa)
	Cre-zig-1	CRE-ZIG-1 protein. (265 aa)
	CRE_08123	Uncharacterized protein. (489 aa)
	Cre-afd-1	CRE-AFD-1 protein. (1310 aa)
	Cre-rig-5	CRE-RIG-5 protein. (379 aa)
	Cre-rig-4	CRE-RIG-4 protein. (2353 aa)
	Cre-igcm-1	CRE-IGCM-1 protein. (1063 aa)
	Cre-ncam-1	CRE-NCAM-1 protein. (970 aa)
	CRE_16675	Uncharacterized protein. (1105 aa)
	CRE_16676	Uncharacterized protein. (1247 aa)
	Cre-syg-2	CRE-SYG-2 protein. (1277 aa)
	Cre-slt-1	CRE-SLT-1 protein. (857 aa)
	Cre-wrk-1	CRE-WRK-1 protein. (443 aa)
	Cre-rig-1	CRE-RIG-1 protein. (1080 aa)
	CRE_05959	Uncharacterized protein. (253 aa)
	Cre-zoo-1	CRE-ZOO-1 protein. (1201 aa)
	CRE_23188	Uncharacterized protein. (1343 aa)
	CRE_32630	Uncharacterized protein. (111 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_05959	CRE_08123	E3MZ96	E3M3I8	Uncharacterized protein.	Uncharacterized protein.	0.448
CRE_05959	CRE_16675	E3MZ96	E3MB16	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_05959	CRE_16676	E3MZ96	E3MB17	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_05959	CRE_23188	E3MZ96	E3NKY4	Uncharacterized protein.	Uncharacterized protein.	0.617
CRE_05959	CRE_26544	E3MZ96	E3LR59	Uncharacterized protein.	Uncharacterized protein.	0.649
CRE_05959	Cre-afd-1	E3MZ96	E3M3I9	Uncharacterized protein.	CRE-AFD-1 protein.	0.448
CRE_05959	Cre-igcm-1	E3MZ96	E3MA57	Uncharacterized protein.	CRE-IGCM-1 protein.	0.795
CRE_05959	Cre-ncam-1	E3MZ96	E3MA82	Uncharacterized protein.	CRE-NCAM-1 protein.	0.617
CRE_05959	Cre-slt-1	E3MZ96	E3MC35	Uncharacterized protein.	CRE-SLT-1 protein.	0.646
CRE_05959	Cre-syg-2	E3MZ96	E3MC33	Uncharacterized protein.	CRE-SYG-2 protein.	0.795
CRE_05959	Cre-wrk-1	E3MZ96	E3MUB3	Uncharacterized protein.	CRE-WRK-1 protein.	0.542
CRE_05959	Cre-zig-1	E3MZ96	E3M3C3	Uncharacterized protein.	CRE-ZIG-1 protein.	0.432
CRE_08123	CRE_05959	E3M3I8	E3MZ96	Uncharacterized protein.	Uncharacterized protein.	0.448
CRE_08123	CRE_16675	E3M3I8	E3MB16	Uncharacterized protein.	Uncharacterized protein.	0.438
CRE_08123	CRE_16676	E3M3I8	E3MB17	Uncharacterized protein.	Uncharacterized protein.	0.438
CRE_08123	CRE_23188	E3M3I8	E3NKY4	Uncharacterized protein.	Uncharacterized protein.	0.438
CRE_08123	CRE_32630	E3M3I8	E3NRJ2	Uncharacterized protein.	Uncharacterized protein.	0.481
CRE_08123	Cre-afd-1	E3M3I8	E3M3I9	Uncharacterized protein.	CRE-AFD-1 protein.	0.917
CRE_08123	Cre-igcm-1	E3M3I8	E3MA57	Uncharacterized protein.	CRE-IGCM-1 protein.	0.882
CRE_08123	Cre-ncam-1	E3M3I8	E3MA82	Uncharacterized protein.	CRE-NCAM-1 protein.	0.438