(13 nodes) Golgi transport complex, and Ric1-Rgp1 guanyl-nucleotide exchange factor complex network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_02190	RIC1 domain-containing protein. (1487 aa)
	Cre-cogc-1	CRE-COGC-1 protein. (522 aa)
	CRE_28061	Uncharacterized protein. (297 aa)
	Cre-cogc-6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (636 aa)
	CRE_10217	Uncharacterized protein. (278 aa)
	Cre-cogc-8	CRE-COGC-8 protein. (226 aa)
	Cre-rab-6.2	CRE-RAB-6.2 protein. (205 aa)
	Cre-cogc-4	CRE-COGC-4 protein. (839 aa)
	Cre-cogc-5	CRE-COGC-5 protein. (656 aa)
	Cre-cogc-2	CRE-COGC-2 protein. (683 aa)
	CRE_30091	Uncharacterized protein. (191 aa)
	Cre-rab-6.1	CRE-RAB-6.1 protein. (205 aa)
	Cre-cogc-3	CRE-COGC-3 protein. (812 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_02190	CRE_10217	E3LFK0	E3M700	RIC1 domain-containing protein.	Uncharacterized protein.	0.900
CRE_02190	CRE_28061	E3LFK0	E3LM41	RIC1 domain-containing protein.	Uncharacterized protein.	0.725
CRE_02190	CRE_30091	E3LFK0	E3MYE8	RIC1 domain-containing protein.	Uncharacterized protein.	0.867
CRE_02190	Cre-cogc-1	E3LFK0	E3LM39	RIC1 domain-containing protein.	CRE-COGC-1 protein.	0.725
CRE_02190	Cre-cogc-2	E3LFK0	E3MK88	RIC1 domain-containing protein.	CRE-COGC-2 protein.	0.751
CRE_02190	Cre-cogc-3	E3LFK0	E3N4T2	RIC1 domain-containing protein.	CRE-COGC-3 protein.	0.805
CRE_02190	Cre-cogc-4	E3LFK0	E3MDM6	RIC1 domain-containing protein.	CRE-COGC-4 protein.	0.728
CRE_02190	Cre-cogc-5	E3LFK0	E3MGJ3	RIC1 domain-containing protein.	CRE-COGC-5 protein.	0.750
CRE_02190	Cre-cogc-6	E3LFK0	E3LZM2	RIC1 domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.859
CRE_02190	Cre-cogc-8	E3LFK0	E3M702	RIC1 domain-containing protein.	CRE-COGC-8 protein.	0.900
CRE_02190	Cre-rab-6.1	E3LFK0	E3N093	RIC1 domain-containing protein.	CRE-RAB-6.1 protein.	0.964
CRE_02190	Cre-rab-6.2	E3LFK0	E3MAK4	RIC1 domain-containing protein.	CRE-RAB-6.2 protein.	0.964
CRE_10217	CRE_02190	E3M700	E3LFK0	Uncharacterized protein.	RIC1 domain-containing protein.	0.900
CRE_10217	CRE_28061	E3M700	E3LM41	Uncharacterized protein.	Uncharacterized protein.	0.968
CRE_10217	CRE_30091	E3M700	E3MYE8	Uncharacterized protein.	Uncharacterized protein.	0.915
CRE_10217	Cre-cogc-1	E3M700	E3LM39	Uncharacterized protein.	CRE-COGC-1 protein.	0.972
CRE_10217	Cre-cogc-2	E3M700	E3MK88	Uncharacterized protein.	CRE-COGC-2 protein.	0.971
CRE_10217	Cre-cogc-3	E3M700	E3N4T2	Uncharacterized protein.	CRE-COGC-3 protein.	0.986
CRE_10217	Cre-cogc-4	E3M700	E3MDM6	Uncharacterized protein.	CRE-COGC-4 protein.	0.987
CRE_10217	Cre-cogc-5	E3M700	E3MGJ3	Uncharacterized protein.	CRE-COGC-5 protein.	0.984