(12 nodes) Mixed, incl. Rab-protein geranylgeranyltransferase complex, and Cellular pigmentation network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_26528	Uncharacterized protein. (262 aa)
	Cre-ggtb-1	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (316 aa)
	CRE_02992	Uncharacterized protein. (671 aa)
	CRE_07490	Uncharacterized protein. (651 aa)
	Cre-rab-1	CRE-RAB-1 protein. (205 aa)
	CRE_28753	Uncharacterized protein. (391 aa)
	CRE_03222	Uncharacterized protein. (71 aa)
	CRE_03224	Uncharacterized protein. (420 aa)
	CRE_14107	Uncharacterized protein. (582 aa)
	Cre-rab-10	CRE-RAB-10 protein. (201 aa)
	CRE_01455	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (444 aa)
	CRE_13856	Uncharacterized protein. (500 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01455	CRE_02992	E3NC63	E3LX29	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.743
CRE_01455	CRE_03222	E3NC63	E3MMF3	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.904
CRE_01455	CRE_03224	E3NC63	E3MMF6	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.790
CRE_01455	CRE_07490	E3NC63	E3M2W5	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.956
CRE_01455	CRE_13856	E3NC63	E3NUT3	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.820
CRE_01455	CRE_14107	E3NC63	E3MRJ9	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.820
CRE_01455	CRE_26528	E3NC63	E3LR26	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.952
CRE_01455	CRE_28753	E3NC63	E3MKB9	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.904
CRE_01455	Cre-ggtb-1	E3NC63	E3LSU8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.933
CRE_01455	Cre-rab-1	E3NC63	E3MBM5	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	CRE-RAB-1 protein.	0.998
CRE_01455	Cre-rab-10	E3NC63	E3MVV8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	CRE-RAB-10 protein.	0.983
CRE_02992	CRE_01455	E3LX29	E3NC63	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.743
CRE_02992	CRE_03222	E3LX29	E3MMF3	Uncharacterized protein.	Uncharacterized protein.	0.861
CRE_02992	CRE_03224	E3LX29	E3MMF6	Uncharacterized protein.	Uncharacterized protein.	0.855
CRE_02992	CRE_07490	E3LX29	E3M2W5	Uncharacterized protein.	Uncharacterized protein.	0.824
CRE_02992	CRE_13856	E3LX29	E3NUT3	Uncharacterized protein.	Uncharacterized protein.	0.986
CRE_02992	CRE_14107	E3LX29	E3MRJ9	Uncharacterized protein.	Uncharacterized protein.	0.986
CRE_02992	CRE_26528	E3LX29	E3LR26	Uncharacterized protein.	Uncharacterized protein.	0.746
CRE_02992	CRE_28753	E3LX29	E3MKB9	Uncharacterized protein.	Uncharacterized protein.	0.875
CRE_02992	Cre-ggtb-1	E3LX29	E3LSU8	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.980