(5 nodes) Mixed, incl. S4 RNA-binding domain, and Ribosomal protein S8e/ribosomal biogenesis NSA2 network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_28209	S4 RNA-binding domain-containing protein. (230 aa)
	Cre-rps-15	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family. (151 aa)
	Cre-rps-19	CRE-RPS-19 protein. (146 aa)
	Cre-rps-8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	CRE_12551	Uncharacterized protein. (88 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_12551	CRE_28209	E3M7L5	E3LMW0	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.995
CRE_12551	Cre-rps-15	E3M7L5	E3LVM8	Uncharacterized protein.	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family.	0.999
CRE_12551	Cre-rps-19	E3M7L5	E3M3T0	Uncharacterized protein.	CRE-RPS-19 protein.	0.999
CRE_12551	Cre-rps-8	E3M7L5	E3M791	Uncharacterized protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
CRE_28209	CRE_12551	E3LMW0	E3M7L5	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.995
CRE_28209	Cre-rps-15	E3LMW0	E3LVM8	S4 RNA-binding domain-containing protein.	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family.	0.999
CRE_28209	Cre-rps-19	E3LMW0	E3M3T0	S4 RNA-binding domain-containing protein.	CRE-RPS-19 protein.	0.999
CRE_28209	Cre-rps-8	E3LMW0	E3M791	S4 RNA-binding domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
Cre-rps-15	CRE_12551	E3LVM8	E3M7L5	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
Cre-rps-15	CRE_28209	E3LVM8	E3LMW0	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family.	S4 RNA-binding domain-containing protein.	0.999
Cre-rps-15	Cre-rps-19	E3LVM8	E3M3T0	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family.	CRE-RPS-19 protein.	0.999
Cre-rps-15	Cre-rps-8	E3LVM8	E3M791	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
Cre-rps-19	CRE_12551	E3M3T0	E3M7L5	CRE-RPS-19 protein.	Uncharacterized protein.	0.999
Cre-rps-19	CRE_28209	E3M3T0	E3LMW0	CRE-RPS-19 protein.	S4 RNA-binding domain-containing protein.	0.999
Cre-rps-19	Cre-rps-15	E3M3T0	E3LVM8	CRE-RPS-19 protein.	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family.	0.999
Cre-rps-19	Cre-rps-8	E3M3T0	E3M791	CRE-RPS-19 protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
Cre-rps-8	CRE_12551	E3M791	E3M7L5	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Uncharacterized protein.	0.999
Cre-rps-8	CRE_28209	E3M791	E3LMW0	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	S4 RNA-binding domain-containing protein.	0.999
Cre-rps-8	Cre-rps-15	E3M791	E3LVM8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	CRE-RPS-15 protein; Belongs to the universal ribosomal protein uS19 family.	0.999
Cre-rps-8	Cre-rps-19	E3M791	E3M3T0	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	CRE-RPS-19 protein.	0.999