(100 nodes) Mitochondrial translation elongation, and Organellar small ribosomal subunit network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRE_01704	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (748 aa)
	CRE_02212	Uncharacterized protein. (422 aa)
	Cre-dap-3	CRE-DAP-3 protein. (399 aa)
	Cre-tars-1	CRE-TARS-1 protein. (749 aa)
	CRE_01951	Uncharacterized protein. (238 aa)
	CRE_01593	Uncharacterized protein. (238 aa)
	CRE_18550	Uncharacterized protein. (293 aa)
	CRE_28472	Uncharacterized protein. (216 aa)
	CRE_28168	RIBOSOMAL_L9 domain-containing protein. (352 aa)
	CRE_28178	Uncharacterized protein. (362 aa)
	CRE_28180	Uncharacterized protein. (356 aa)
	CRE_27425	Uncharacterized protein. (208 aa)
	CRE_27426	C2H2-type domain-containing protein. (629 aa)
	Cre-mrps-5	CRE-MRPS-5 protein; Belongs to the universal ribosomal protein uS5 family. (434 aa)
	CRE_27151	Uncharacterized protein. (189 aa)
	Cre-tsfm-1	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (317 aa)
	CRE_26147	Uncharacterized protein. (129 aa)
	CRE_26503	Uncharacterized protein. (155 aa)
	CRE_25247	Uncharacterized protein. (77 aa)
	CRE_25107	Uncharacterized protein. (181 aa)
	CRE_25407	Uncharacterized protein. (392 aa)
	CRE_25427	Uncharacterized protein. (170 aa)
	CRE_25457	Uncharacterized protein. (385 aa)
	CRE_25461	Uncharacterized protein. (158 aa)
	CRE_30794	Ribosomal_S10 domain-containing protein. (186 aa)
	CRE_29451	Uncharacterized protein. (159 aa)
	CRE_29504	KOW domain-containing protein. (278 aa)
	CRE_29741	Uncharacterized protein. (330 aa)
	Cre-tag-264	CRE-TAG-264 protein. (710 aa)
	CRE_03025	Ribosomal_S10 domain-containing protein. (158 aa)
	Cre-tufm-1	CRE-TUFM-1 protein. (496 aa)
	Cre-rps-3	CRE-RPS-3 protein; Belongs to the universal ribosomal protein uS3 family. (255 aa)
	CRE_03174	Uncharacterized protein. (160 aa)
	CRE_03651	Uncharacterized protein. (288 aa)
	CRE_03682	Ribosomal_L18e/L15P domain-containing protein. (298 aa)
	CRE_03742	Uncharacterized protein. (414 aa)
	CRE_04754	RF_PROK_I domain-containing protein. (168 aa)
	CRE_04612	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (298 aa)
	CRE_04620	Uncharacterized protein. (202 aa)
	CRE_05534	Uncharacterized protein. (261 aa)
	CRE_05535	Uncharacterized protein. (243 aa)
	Cre-rpl-7	CRE-RPL-7 protein. (244 aa)
	CRE_08165	Uncharacterized protein. (204 aa)
	CRE_11780	Uncharacterized protein. (147 aa)
	CRE_10244	Uncharacterized protein. (118 aa)
	CRE_12735	Uncharacterized protein. (377 aa)
	CRE_12533	Uncharacterized protein. (167 aa)
	CRE_20334	Ribosomal_L16 domain-containing protein. (239 aa)
	CRE_20252	Uncharacterized protein. (228 aa)
	Cre-mrpl-41	CRE-MRPL-41 protein. (190 aa)
	CRE_21144	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (161 aa)
	CRE_20694	Uncharacterized protein. (429 aa)
	CRE_20702	Uncharacterized protein. (128 aa)
	CRE_24039	L51_S25_CI-B8 domain-containing protein. (189 aa)
	CRE_23987	RRF domain-containing protein. (238 aa)
	CRE_23988	Uncharacterized protein. (152 aa)
	CRE_24015	Uncharacterized protein. (162 aa)
	Cre-tufm-2	CRE-TUFM-2 protein. (440 aa)
	CRE_22871	Uncharacterized protein. (1569 aa)
	CRE_24908	Uncharacterized protein. (124 aa)
	CRE_01045	Uncharacterized protein. (184 aa)
	CRE_01093	Uncharacterized protein. (274 aa)
	Cre-rpl-35	CRE-RPL-35 protein. (123 aa)
	CRE_04018	Uncharacterized protein. (191 aa)
	Cre-rps-22	CRE-RPS-22 protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	CRE_13536	CHCH domain-containing protein. (161 aa)
	CRE_16175	Uncharacterized protein. (187 aa)
	CRE_15479	Uncharacterized protein. (199 aa)
	CRE_15583	Ig-like domain-containing protein. (376 aa)
	Cre-rpl-9	CRE-RPL-9 protein. (189 aa)
	CRE_29322	Uncharacterized protein. (252 aa)
	CRE_30063	Uncharacterized protein. (194 aa)
	CRE_11360	MRP-S28 domain-containing protein. (360 aa)
	CRE_20492	Uncharacterized protein. (73 aa)
	CRE_06016	Uncharacterized protein. (180 aa)
	CRE_12251	Uncharacterized protein. (169 aa)
	CRE_23097	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	CRE_16413	Ribosomal_S7 domain-containing protein. (229 aa)
	CRE_02640	Uncharacterized protein. (155 aa)
	CRE_30165	Uncharacterized protein. (205 aa)
	CRE_10666	L51_S25_CI-B8 domain-containing protein. (170 aa)
	CRE_10651	Uncharacterized protein. (346 aa)
	CRE_20028	Uncharacterized protein. (714 aa)
	CRE_29195	Uncharacterized protein. (345 aa)
	CRE_26805	Tim44 domain-containing protein. (361 aa)
	CRE_05231	SRR1 domain-containing protein. (229 aa)
	CRE_05232	Ribosomal_L2_C domain-containing protein. (321 aa)
	CRE_31545	Uncharacterized protein. (358 aa)
	CRE_08595	Protein kinase domain-containing protein. (410 aa)
	CRE_08587	Uncharacterized protein. (189 aa)
	CRE_03500	Tr-type G domain-containing protein. (760 aa)
	CRE_26849	Uncharacterized protein. (131 aa)
	CRE_14372	Uncharacterized protein. (151 aa)
	Cre-tag-313	CRE-TAG-313 protein. (122 aa)
	CRE_23789	Uncharacterized protein. (288 aa)
	CRE_29285	Ribosomal_S7 domain-containing protein. (222 aa)
	CRE_16559	Uncharacterized protein. (113 aa)
	CRE_15153	Tr-type G domain-containing protein. (425 aa)
	CRE_26933	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (218 aa)
	CRE_23294	Peptidylprolyl isomerase. (355 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01045	CRE_01093	E3MI13	E3MIF8	Uncharacterized protein.	Uncharacterized protein.	0.953
CRE_01045	CRE_01593	E3MI13	E3LGN6	Uncharacterized protein.	Uncharacterized protein.	0.968
CRE_01045	CRE_01704	E3MI13	E3LF07	Uncharacterized protein.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.904
CRE_01045	CRE_01951	E3MI13	E3LGG7	Uncharacterized protein.	Uncharacterized protein.	0.923
CRE_01045	CRE_02212	E3MI13	E3LFP1	Uncharacterized protein.	Uncharacterized protein.	0.926
CRE_01045	CRE_02640	E3MI13	E3NDD2	Uncharacterized protein.	Uncharacterized protein.	0.951
CRE_01045	CRE_03025	E3MI13	E3LW64	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.997
CRE_01045	CRE_03174	E3MI13	E3LWY5	Uncharacterized protein.	Uncharacterized protein.	0.925
CRE_01045	CRE_03500	E3MI13	E3NK36	Uncharacterized protein.	Tr-type G domain-containing protein.	0.863
CRE_01045	CRE_03651	E3MI13	E3LXG4	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_01045	CRE_03682	E3MI13	E3LXN3	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.992
CRE_01045	CRE_03742	E3MI13	E3LY02	Uncharacterized protein.	Uncharacterized protein.	0.927
CRE_01045	CRE_04018	E3MI13	E3MMS4	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_01045	CRE_04612	E3MI13	E3LZF1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.997
CRE_01045	CRE_04620	E3MI13	E3LZG5	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_01045	CRE_04754	E3MI13	E3LZ26	Uncharacterized protein.	RF_PROK_I domain-containing protein.	0.983
CRE_01045	CRE_05231	E3MI13	E3NGT5	Uncharacterized protein.	SRR1 domain-containing protein.	0.988
CRE_01045	CRE_05232	E3MI13	E3NGT7	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.997
CRE_01045	CRE_05534	E3MI13	E3LZT8	Uncharacterized protein.	Uncharacterized protein.	0.995
CRE_01045	CRE_05535	E3MI13	E3LZT9	Uncharacterized protein.	Uncharacterized protein.	0.997