(6 nodes) Mixed, incl. Ribosomal protein L7/L12, and K homology domain superfamily, prokaryotic type network (Caenorhabditis remanei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cre-rps-3	CRE-RPS-3 protein; Belongs to the universal ribosomal protein uS3 family. (255 aa)
	CRE_03651	Uncharacterized protein. (288 aa)
	CRE_04620	Uncharacterized protein. (202 aa)
	CRE_24908	Uncharacterized protein. (124 aa)
	CRE_01045	Uncharacterized protein. (184 aa)
	Cre-rps-22	CRE-RPS-22 protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_01045	CRE_03651	E3MI13	E3LXG4	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_01045	CRE_04620	E3MI13	E3LZG5	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_01045	CRE_24908	E3MI13	E3MHZ6	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_01045	Cre-rps-22	E3MI13	E3MNP9	Uncharacterized protein.	CRE-RPS-22 protein; Belongs to the universal ribosomal protein uS8 family.	0.999
CRE_01045	Cre-rps-3	E3MI13	E3LWQ6	Uncharacterized protein.	CRE-RPS-3 protein; Belongs to the universal ribosomal protein uS3 family.	0.999
CRE_03651	CRE_01045	E3LXG4	E3MI13	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_03651	CRE_04620	E3LXG4	E3LZG5	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_03651	CRE_24908	E3LXG4	E3MHZ6	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_03651	Cre-rps-22	E3LXG4	E3MNP9	Uncharacterized protein.	CRE-RPS-22 protein; Belongs to the universal ribosomal protein uS8 family.	0.999
CRE_03651	Cre-rps-3	E3LXG4	E3LWQ6	Uncharacterized protein.	CRE-RPS-3 protein; Belongs to the universal ribosomal protein uS3 family.	0.999
CRE_04620	CRE_01045	E3LZG5	E3MI13	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_04620	CRE_03651	E3LZG5	E3LXG4	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_04620	CRE_24908	E3LZG5	E3MHZ6	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_04620	Cre-rps-22	E3LZG5	E3MNP9	Uncharacterized protein.	CRE-RPS-22 protein; Belongs to the universal ribosomal protein uS8 family.	0.999
CRE_04620	Cre-rps-3	E3LZG5	E3LWQ6	Uncharacterized protein.	CRE-RPS-3 protein; Belongs to the universal ribosomal protein uS3 family.	0.999
CRE_24908	CRE_01045	E3MHZ6	E3MI13	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_24908	CRE_03651	E3MHZ6	E3LXG4	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_24908	CRE_04620	E3MHZ6	E3LZG5	Uncharacterized protein.	Uncharacterized protein.	0.999
CRE_24908	Cre-rps-22	E3MHZ6	E3MNP9	Uncharacterized protein.	CRE-RPS-22 protein; Belongs to the universal ribosomal protein uS8 family.	0.999
CRE_24908	Cre-rps-3	E3MHZ6	E3LWQ6	Uncharacterized protein.	CRE-RPS-3 protein; Belongs to the universal ribosomal protein uS3 family.	0.999